Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5855 | 5' | -55.5 | NC_001806.1 | + | 64609 | 0.66 | 0.926364 |
Target: 5'- cCCGC-GUugCGCggGCC-CGGCGGCGu -3' miRNA: 3'- cGGUGuCAugGCGa-UGGcGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 61277 | 0.72 | 0.638046 |
Target: 5'- aGCCAgGGUAagaccCCGCggggcgGgCGCGACGGCGg -3' miRNA: 3'- -CGGUgUCAU-----GGCGa-----UgGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 58280 | 0.68 | 0.853815 |
Target: 5'- gGCCGCGGUACagaucgGC-GCCGCGAgaUGGCc -3' miRNA: 3'- -CGGUGUCAUGg-----CGaUGGCGCU--GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 57220 | 0.67 | 0.90932 |
Target: 5'- cGCCGCGGUgGCCGUggaacuggcGCUGUucgGGCGGCGg -3' miRNA: 3'- -CGGUGUCA-UGGCGa--------UGGCG---CUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 56791 | 0.67 | 0.896783 |
Target: 5'- cGCCACGcaagcgGCCGCggacgUGCgggaGCGACGGCGg -3' miRNA: 3'- -CGGUGUca----UGGCG-----AUGg---CGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 55781 | 0.69 | 0.821117 |
Target: 5'- cGCCugGGgucgcgGCCGCgACCcagGCGGCGAa- -3' miRNA: 3'- -CGGugUCa-----UGGCGaUGG---CGCUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 55528 | 0.67 | 0.879122 |
Target: 5'- cGCCACGGUggugcaguucgagcaGCCGC-GCCGCugccCGACc -3' miRNA: 3'- -CGGUGUCA---------------UGGCGaUGGCGcu--GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 49788 | 0.68 | 0.861508 |
Target: 5'- cGUCGCGGUAgCGgUACUGUGGcCGGCc -3' miRNA: 3'- -CGGUGUCAUgGCgAUGGCGCU-GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 48473 | 0.72 | 0.658424 |
Target: 5'- uGCUGCAGacccccggGCgGCgccGCCGCGGCGGCGa -3' miRNA: 3'- -CGGUGUCa-------UGgCGa--UGGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 40361 | 0.72 | 0.626826 |
Target: 5'- cGCgUACAGUucgagguccaccaGCCGCUGauugcCCGCGACGGCc -3' miRNA: 3'- -CG-GUGUCA-------------UGGCGAU-----GGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 38365 | 0.69 | 0.794777 |
Target: 5'- gGCCACGaccCCGUguaCGCGGCGGCAu -3' miRNA: 3'- -CGGUGUcauGGCGaugGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 38264 | 0.66 | 0.936541 |
Target: 5'- cGCCGCGGaugaccgGCCGC-ACCG-GGgGGCGg -3' miRNA: 3'- -CGGUGUCa------UGGCGaUGGCgCUgCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 38183 | 0.66 | 0.915237 |
Target: 5'- cUCGCGGgGCCGCUGCUGCaccGCGGgGg -3' miRNA: 3'- cGGUGUCaUGGCGAUGGCGc--UGCUgU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 36743 | 0.72 | 0.648241 |
Target: 5'- uCCACGGccACCGCcGCCaGCGACGuACAg -3' miRNA: 3'- cGGUGUCa-UGGCGaUGG-CGCUGC-UGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 34317 | 0.72 | 0.648241 |
Target: 5'- cGUCGCGGUACCGCc----CGACGACAg -3' miRNA: 3'- -CGGUGUCAUGGCGauggcGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 33071 | 0.66 | 0.920919 |
Target: 5'- cGCCGCcGccCCGCcgGCCGCGAaggaGGCu -3' miRNA: 3'- -CGGUGuCauGGCGa-UGGCGCUg---CUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 31921 | 0.67 | 0.876272 |
Target: 5'- gGCgGCGGgucgucCCGCU-CgGCGACGACc -3' miRNA: 3'- -CGgUGUCau----GGCGAuGgCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 31061 | 0.72 | 0.668585 |
Target: 5'- aCCGCgAGcGCCGCUACUGCG-CGAUc -3' miRNA: 3'- cGGUG-UCaUGGCGAUGGCGCuGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 26419 | 0.68 | 0.845923 |
Target: 5'- cGCCGCGGgcccccggccGCCGCggacGCCGUGGCGcCc -3' miRNA: 3'- -CGGUGUCa---------UGGCGa---UGGCGCUGCuGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 26161 | 0.71 | 0.698859 |
Target: 5'- aGCCuGCuGUuUCGCUACUGCGugGGCc -3' miRNA: 3'- -CGG-UGuCAuGGCGAUGGCGCugCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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