miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 89093 0.66 0.936541
Target:  5'- aCCGCAGguugUCGUUGCCGCGGguGCAc -3'
miRNA:   3'- cGGUGUCau--GGCGAUGGCGCUgcUGU- -5'
5855 5' -55.5 NC_001806.1 + 150262 0.66 0.936541
Target:  5'- cGCCA-GGUagGCgUGCUGCCGCGACa--- -3'
miRNA:   3'- -CGGUgUCA--UG-GCGAUGGCGCUGcugu -5'
5855 5' -55.5 NC_001806.1 + 148058 0.66 0.936541
Target:  5'- gGCCACGGcuccCCGCUGacguacCCGUcGCGAUAg -3'
miRNA:   3'- -CGGUGUCau--GGCGAU------GGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 129332 0.66 0.936541
Target:  5'- cCCGCGGgccCCGCUuccccGCCGCGcCGcACGc -3'
miRNA:   3'- cGGUGUCau-GGCGA-----UGGCGCuGC-UGU- -5'
5855 5' -55.5 NC_001806.1 + 124989 0.66 0.936541
Target:  5'- gGCCAauCGGcgGCCGCcAgCGCGGCGGg- -3'
miRNA:   3'- -CGGU--GUCa-UGGCGaUgGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 99396 0.66 0.926364
Target:  5'- cCCgACAGgcgACCGC--CgGCGGCGACGu -3'
miRNA:   3'- cGG-UGUCa--UGGCGauGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 70317 0.66 0.920919
Target:  5'- cGCCuccCGGgACCGCcggguuCgGCGGCGACGg -3'
miRNA:   3'- -CGGu--GUCaUGGCGau----GgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 150666 0.67 0.90932
Target:  5'- cGCCAC-GUACaCGg-GCCGCaGCGGCGc -3'
miRNA:   3'- -CGGUGuCAUG-GCgaUGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 109080 0.67 0.90932
Target:  5'- cGCCcaagggcCAGUAcCCGC--CCGCGAUGGCu -3'
miRNA:   3'- -CGGu------GUCAU-GGCGauGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 57220 0.67 0.90932
Target:  5'- cGCCGCGGUgGCCGUggaacuggcGCUGUucgGGCGGCGg -3'
miRNA:   3'- -CGGUGUCA-UGGCGa--------UGGCG---CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 117731 0.66 0.914656
Target:  5'- -gCGCGGgccggGCCGCUcguaagaGCCGCGAccCGGCc -3'
miRNA:   3'- cgGUGUCa----UGGCGA-------UGGCGCU--GCUGu -5'
5855 5' -55.5 NC_001806.1 + 146667 0.66 0.915237
Target:  5'- cGCCGgGGgcCCGUgGCCGCGGCc--- -3'
miRNA:   3'- -CGGUgUCauGGCGaUGGCGCUGcugu -5'
5855 5' -55.5 NC_001806.1 + 128301 0.66 0.915237
Target:  5'- cGCCGgAGUGguCCGCcgAgCGCGGCGGg- -3'
miRNA:   3'- -CGGUgUCAU--GGCGa-UgGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 100461 0.66 0.915237
Target:  5'- gGCCA-AGUacGCCGCcACCGUGGcCGGCc -3'
miRNA:   3'- -CGGUgUCA--UGGCGaUGGCGCU-GCUGu -5'
5855 5' -55.5 NC_001806.1 + 86925 0.66 0.915237
Target:  5'- cGUCugGGUACCGgUagacguccccGCCgaGCGACGugGg -3'
miRNA:   3'- -CGGugUCAUGGCgA----------UGG--CGCUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 38183 0.66 0.915237
Target:  5'- cUCGCGGgGCCGCUGCUGCaccGCGGgGg -3'
miRNA:   3'- cGGUGUCaUGGCGAUGGCGc--UGCUgU- -5'
5855 5' -55.5 NC_001806.1 + 85252 0.66 0.915237
Target:  5'- cCCGC-GUcCCGCgguaguugGCCGUGACGugGg -3'
miRNA:   3'- cGGUGuCAuGGCGa-------UGGCGCUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 77779 0.66 0.920919
Target:  5'- cGCCGCAGcucgggucugGCCgaGCUGCgGCGcuuCGACGc -3'
miRNA:   3'- -CGGUGUCa---------UGG--CGAUGgCGCu--GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 97896 0.66 0.920919
Target:  5'- cGCCGauga--CGCUGCCGCGACuGugAu -3'
miRNA:   3'- -CGGUgucaugGCGAUGGCGCUG-CugU- -5'
5855 5' -55.5 NC_001806.1 + 33071 0.66 0.920919
Target:  5'- cGCCGCcGccCCGCcgGCCGCGAaggaGGCu -3'
miRNA:   3'- -CGGUGuCauGGCGa-UGGCGCUg---CUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.