Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5855 | 5' | -55.5 | NC_001806.1 | + | 107766 | 0.67 | 0.896783 |
Target: 5'- aCCGUGGUGCCGuUUGCCGgGACGGu- -3' miRNA: 3'- cGGUGUCAUGGC-GAUGGCgCUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 77091 | 0.67 | 0.89017 |
Target: 5'- cGCCgGCAGcGCCGCcgUCGCaACGGCAg -3' miRNA: 3'- -CGG-UGUCaUGGCGauGGCGcUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 77600 | 0.67 | 0.89017 |
Target: 5'- gGCCAUGGaUGCCGCcaa-GCuGACGGCAg -3' miRNA: 3'- -CGGUGUC-AUGGCGauggCG-CUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 139489 | 0.67 | 0.89017 |
Target: 5'- uGCCAgGagacUGCCGCccACCGCGcCGGCGa -3' miRNA: 3'- -CGGUgUc---AUGGCGa-UGGCGCuGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 149173 | 0.67 | 0.89017 |
Target: 5'- uCCGCGGcgGCgGCgGCCGCGGagcuCGGCAg -3' miRNA: 3'- cGGUGUCa-UGgCGaUGGCGCU----GCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 149264 | 0.67 | 0.883332 |
Target: 5'- gGCgGCGGcgGCCGCcAgCGCGuCGGCGg -3' miRNA: 3'- -CGgUGUCa-UGGCGaUgGCGCuGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 55528 | 0.67 | 0.879122 |
Target: 5'- cGCCACGGUggugcaguucgagcaGCCGC-GCCGCugccCGACc -3' miRNA: 3'- -CGGUGUCA---------------UGGCGaUGGCGcu--GCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 127766 | 0.67 | 0.896783 |
Target: 5'- cCCGCgcgAGUACCGCcggGCCGUGcugcCGGCGc -3' miRNA: 3'- cGGUG---UCAUGGCGa--UGGCGCu---GCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 56791 | 0.67 | 0.896783 |
Target: 5'- cGCCACGcaagcgGCCGCggacgUGCgggaGCGACGGCGg -3' miRNA: 3'- -CGGUGUca----UGGCG-----AUGg---CGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 84259 | 0.67 | 0.899365 |
Target: 5'- gGCCGCGGgggaucgauaauucGCCGCUcCCuacaGCGcACGACAg -3' miRNA: 3'- -CGGUGUCa-------------UGGCGAuGG----CGC-UGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 57220 | 0.67 | 0.90932 |
Target: 5'- cGCCGCGGUgGCCGUggaacuggcGCUGUucgGGCGGCGg -3' miRNA: 3'- -CGGUGUCA-UGGCGa--------UGGCG---CUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 109080 | 0.67 | 0.90932 |
Target: 5'- cGCCcaagggcCAGUAcCCGC--CCGCGAUGGCu -3' miRNA: 3'- -CGGu------GUCAU-GGCGauGGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 150666 | 0.67 | 0.90932 |
Target: 5'- cGCCAC-GUACaCGg-GCCGCaGCGGCGc -3' miRNA: 3'- -CGGUGuCAUG-GCgaUGGCGcUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 83693 | 0.67 | 0.90932 |
Target: 5'- uCCGCcGgcCUGCgcACCGCGGCGGCc -3' miRNA: 3'- cGGUGuCauGGCGa-UGGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 87384 | 0.67 | 0.90932 |
Target: 5'- gGCCACGGcgggaucgGCCGCaagACCaGCGcCGGCc -3' miRNA: 3'- -CGGUGUCa-------UGGCGa--UGG-CGCuGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 100680 | 0.67 | 0.905656 |
Target: 5'- cGCCACccaggcgcugggcgaGGUGgaGCUGCC-CGGCGGCc -3' miRNA: 3'- -CGGUG---------------UCAUggCGAUGGcGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 4231 | 0.67 | 0.903167 |
Target: 5'- cGCCGCc--GCCGCUGCUGUugGugGugGu -3' miRNA: 3'- -CGGUGucaUGGCGAUGGCG--CugCugU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 73638 | 0.67 | 0.903167 |
Target: 5'- cGCCACcc-ACCGCacccCCGCGGCGcGCGu -3' miRNA: 3'- -CGGUGucaUGGCGau--GGCGCUGC-UGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 81860 | 0.67 | 0.903167 |
Target: 5'- cGCCAUcGUGCUGCUGCgGCuGC-ACAu -3' miRNA: 3'- -CGGUGuCAUGGCGAUGgCGcUGcUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 87029 | 0.67 | 0.903167 |
Target: 5'- aCCGCAGaGCgGC-GCCGUGugucGCGACAg -3' miRNA: 3'- cGGUGUCaUGgCGaUGGCGC----UGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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