miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 128301 0.66 0.915237
Target:  5'- cGCCGgAGUGguCCGCcgAgCGCGGCGGg- -3'
miRNA:   3'- -CGGUgUCAU--GGCGa-UgGCGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 100461 0.66 0.915237
Target:  5'- gGCCA-AGUacGCCGCcACCGUGGcCGGCc -3'
miRNA:   3'- -CGGUgUCA--UGGCGaUGGCGCU-GCUGu -5'
5855 5' -55.5 NC_001806.1 + 86925 0.66 0.915237
Target:  5'- cGUCugGGUACCGgUagacguccccGCCgaGCGACGugGg -3'
miRNA:   3'- -CGGugUCAUGGCgA----------UGG--CGCUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 38183 0.66 0.915237
Target:  5'- cUCGCGGgGCCGCUGCUGCaccGCGGgGg -3'
miRNA:   3'- cGGUGUCaUGGCGAUGGCGc--UGCUgU- -5'
5855 5' -55.5 NC_001806.1 + 85252 0.66 0.915237
Target:  5'- cCCGC-GUcCCGCgguaguugGCCGUGACGugGg -3'
miRNA:   3'- cGGUGuCAuGGCGa-------UGGCGCUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 117731 0.66 0.914656
Target:  5'- -gCGCGGgccggGCCGCUcguaagaGCCGCGAccCGGCc -3'
miRNA:   3'- cgGUGUCa----UGGCGA-------UGGCGCU--GCUGu -5'
5855 5' -55.5 NC_001806.1 + 57220 0.67 0.90932
Target:  5'- cGCCGCGGUgGCCGUggaacuggcGCUGUucgGGCGGCGg -3'
miRNA:   3'- -CGGUGUCA-UGGCGa--------UGGCG---CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 109080 0.67 0.90932
Target:  5'- cGCCcaagggcCAGUAcCCGC--CCGCGAUGGCu -3'
miRNA:   3'- -CGGu------GUCAU-GGCGauGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 150666 0.67 0.90932
Target:  5'- cGCCAC-GUACaCGg-GCCGCaGCGGCGc -3'
miRNA:   3'- -CGGUGuCAUG-GCgaUGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 83693 0.67 0.90932
Target:  5'- uCCGCcGgcCUGCgcACCGCGGCGGCc -3'
miRNA:   3'- cGGUGuCauGGCGa-UGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 87384 0.67 0.90932
Target:  5'- gGCCACGGcgggaucgGCCGCaagACCaGCGcCGGCc -3'
miRNA:   3'- -CGGUGUCa-------UGGCGa--UGG-CGCuGCUGu -5'
5855 5' -55.5 NC_001806.1 + 100680 0.67 0.905656
Target:  5'- cGCCACccaggcgcugggcgaGGUGgaGCUGCC-CGGCGGCc -3'
miRNA:   3'- -CGGUG---------------UCAUggCGAUGGcGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 4231 0.67 0.903167
Target:  5'- cGCCGCc--GCCGCUGCUGUugGugGugGu -3'
miRNA:   3'- -CGGUGucaUGGCGAUGGCG--CugCugU- -5'
5855 5' -55.5 NC_001806.1 + 73638 0.67 0.903167
Target:  5'- cGCCACcc-ACCGCacccCCGCGGCGcGCGu -3'
miRNA:   3'- -CGGUGucaUGGCGau--GGCGCUGC-UGU- -5'
5855 5' -55.5 NC_001806.1 + 81860 0.67 0.903167
Target:  5'- cGCCAUcGUGCUGCUGCgGCuGC-ACAu -3'
miRNA:   3'- -CGGUGuCAUGGCGAUGgCGcUGcUGU- -5'
5855 5' -55.5 NC_001806.1 + 87029 0.67 0.903167
Target:  5'- aCCGCAGaGCgGC-GCCGUGugucGCGACAg -3'
miRNA:   3'- cGGUGUCaUGgCGaUGGCGC----UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 84259 0.67 0.899365
Target:  5'- gGCCGCGGgggaucgauaauucGCCGCUcCCuacaGCGcACGACAg -3'
miRNA:   3'- -CGGUGUCa-------------UGGCGAuGG----CGC-UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127766 0.67 0.896783
Target:  5'- cCCGCgcgAGUACCGCcggGCCGUGcugcCGGCGc -3'
miRNA:   3'- cGGUG---UCAUGGCGa--UGGCGCu---GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 70933 0.67 0.896783
Target:  5'- cGCCGCAGgccaaaCGCggGCCGCaaccaGGCGGCc -3'
miRNA:   3'- -CGGUGUCaug---GCGa-UGGCG-----CUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 76556 0.67 0.896783
Target:  5'- aGCCACG--AgCGCUggGCCGCcGACGugGa -3'
miRNA:   3'- -CGGUGUcaUgGCGA--UGGCG-CUGCugU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.