miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 3' -65.5 NC_001806.1 + 150336 0.66 0.504856
Target:  5'- gGCCaGcACCGUGCGgCgCAGGUccCGCgCCg -3'
miRNA:   3'- aCGG-C-UGGCGCGCgGgGUCCA--GCG-GG- -5'
5859 3' -65.5 NC_001806.1 + 17020 0.66 0.504856
Target:  5'- aGCCcguGAUgGgCGCGCcuaCCCGGGggGCCCg -3'
miRNA:   3'- aCGG---CUGgC-GCGCG---GGGUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 67404 0.66 0.504856
Target:  5'- cGCCGGCgGuCGCGCUCCucugCGgCCg -3'
miRNA:   3'- aCGGCUGgC-GCGCGGGGuccaGCgGG- -5'
5859 3' -65.5 NC_001806.1 + 17291 0.66 0.503952
Target:  5'- cGUCGGCCGuCGCGgcggccaUCCC-GGU-GCCCg -3'
miRNA:   3'- aCGGCUGGC-GCGC-------GGGGuCCAgCGGG- -5'
5859 3' -65.5 NC_001806.1 + 45930 0.66 0.495849
Target:  5'- aGCgGGCCGCGUgauacaccGCCCCcccgaccgccGGUUgggGCCCg -3'
miRNA:   3'- aCGgCUGGCGCG--------CGGGGu---------CCAG---CGGG- -5'
5859 3' -65.5 NC_001806.1 + 32991 0.66 0.495849
Target:  5'- aGCCcuuGGCC-CG-GCCCCAcgcGGgggCGCCCg -3'
miRNA:   3'- aCGG---CUGGcGCgCGGGGU---CCa--GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 136101 0.66 0.495849
Target:  5'- cUGCCgggaGACCGCugcgaucugcggGCGUCCCAGuGgguucaggCGCCUa -3'
miRNA:   3'- -ACGG----CUGGCG------------CGCGGGGUC-Ca-------GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 118893 0.66 0.495849
Target:  5'- gGCCcggagaGCCGCG-GCaCCCGGacgCGCCCg -3'
miRNA:   3'- aCGGc-----UGGCGCgCG-GGGUCca-GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 81219 0.66 0.495849
Target:  5'- gGCCGACCGCGUcgugcuuacgaGCcgucgcgaCCUAGGg-GCCUg -3'
miRNA:   3'- aCGGCUGGCGCG-----------CG--------GGGUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 77040 0.66 0.495849
Target:  5'- gGCCGugCGgGCGCaccgcgUCCuGGUCgacgcggugacgGCCCu -3'
miRNA:   3'- aCGGCugGCgCGCG------GGGuCCAG------------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 59321 0.66 0.495849
Target:  5'- gGCCGGggcCCGCGCGCUgauGGaCGCCg -3'
miRNA:   3'- aCGGCU---GGCGCGCGGgguCCaGCGGg -5'
5859 3' -65.5 NC_001806.1 + 24223 0.66 0.495849
Target:  5'- gGCCGAcgaugcCCGUgGCGgccacggcCCCCAGGUggggGCCCa -3'
miRNA:   3'- aCGGCU------GGCG-CGC--------GGGGUCCAg---CGGG- -5'
5859 3' -65.5 NC_001806.1 + 49821 0.66 0.494952
Target:  5'- cGCCGGCCGCgaacuGCGUCUUGGGgagcuugUCGUCg -3'
miRNA:   3'- aCGGCUGGCG-----CGCGGGGUCC-------AGCGGg -5'
5859 3' -65.5 NC_001806.1 + 133078 0.66 0.494952
Target:  5'- cGCCGAUCGgGagagcucgugaGCCgCAGGUUuacccggGCCCg -3'
miRNA:   3'- aCGGCUGGCgCg----------CGGgGUCCAG-------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 147870 0.66 0.486915
Target:  5'- cGCCGcCCggggcuuggGCGCGgCCUcggagaggggGGGUgGCCCg -3'
miRNA:   3'- aCGGCuGG---------CGCGCgGGG----------UCCAgCGGG- -5'
5859 3' -65.5 NC_001806.1 + 131804 0.66 0.486915
Target:  5'- cGCCGaACCGggaaguCGgGgCCCGGGcccCGCCCc -3'
miRNA:   3'- aCGGC-UGGC------GCgCgGGGUCCa--GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 130467 0.66 0.486915
Target:  5'- cGCCGGCa--GC-CCCCGGGcggacgcCGCCCc -3'
miRNA:   3'- aCGGCUGgcgCGcGGGGUCCa------GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 32147 0.66 0.486915
Target:  5'- gGCCaGGCCauccgggcCGCGCUUCAGGgcgGCCCg -3'
miRNA:   3'- aCGG-CUGGc-------GCGCGGGGUCCag-CGGG- -5'
5859 3' -65.5 NC_001806.1 + 127571 0.66 0.486915
Target:  5'- cGCCGGCCcggcccgguggcGCGgGCCgCggAGGgacuuuugCGCCCg -3'
miRNA:   3'- aCGGCUGG------------CGCgCGGgG--UCCa-------GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 107429 0.66 0.485137
Target:  5'- cGUCGAcCCGCaGgGUCCCGGGggcaaauucccgCGUCCu -3'
miRNA:   3'- aCGGCU-GGCG-CgCGGGGUCCa-----------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.