miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 5' -57.9 NC_001806.1 + 78968 0.67 0.728782
Target:  5'- ----cCGcCGCCCuGGCCCGCGAGg-- -3'
miRNA:   3'- uucuuGC-GCGGGuCCGGGCGUUUgua -5'
5859 5' -57.9 NC_001806.1 + 13588 0.67 0.728782
Target:  5'- -----aGCGCCCGGGCCUGgAuGCGa -3'
miRNA:   3'- uucuugCGCGGGUCCGGGCgUuUGUa -5'
5859 5' -57.9 NC_001806.1 + 94588 0.67 0.718773
Target:  5'- gGAGAAgGCGCCgGGGCuuGCu----- -3'
miRNA:   3'- -UUCUUgCGCGGgUCCGggCGuuugua -5'
5859 5' -57.9 NC_001806.1 + 125193 0.67 0.718773
Target:  5'- cGAGGccCGUGCCCGGGCCCugGCccGCGg -3'
miRNA:   3'- -UUCUu-GCGCGGGUCCGGG--CGuuUGUa -5'
5859 5' -57.9 NC_001806.1 + 76281 0.67 0.718773
Target:  5'- uGGAGCGCgGCCUucGGGgCCGCGgccGACAc -3'
miRNA:   3'- uUCUUGCG-CGGG--UCCgGGCGU---UUGUa -5'
5859 5' -57.9 NC_001806.1 + 146138 0.67 0.708689
Target:  5'- aAAGGcccgGCGCGaCCgAcGCCCGCAGACGg -3'
miRNA:   3'- -UUCU----UGCGC-GGgUcCGGGCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 92392 0.67 0.708689
Target:  5'- --cGACG-GCCCAGGCCgGaCGGACGa -3'
miRNA:   3'- uucUUGCgCGGGUCCGGgC-GUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 144400 0.67 0.708689
Target:  5'- cAAGAgACGuCGCCCcuguGGCCCugGCGGACGg -3'
miRNA:   3'- -UUCU-UGC-GCGGGu---CCGGG--CGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 102901 0.67 0.698537
Target:  5'- cGGcAGCGC-CCCGGGCCCGau-GCGg -3'
miRNA:   3'- uUC-UUGCGcGGGUCCGGGCguuUGUa -5'
5859 5' -57.9 NC_001806.1 + 101848 0.67 0.698537
Target:  5'- uGGGGGCGCGCCUGcaCCCGCAcguGCAc -3'
miRNA:   3'- -UUCUUGCGCGGGUccGGGCGUu--UGUa -5'
5859 5' -57.9 NC_001806.1 + 130753 0.67 0.698537
Target:  5'- -cGGGCcccgGCCCGGGgCCGCGAACGg -3'
miRNA:   3'- uuCUUGcg--CGGGUCCgGGCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 112429 0.67 0.698537
Target:  5'- gGGGggUGCGUCgGGGCCCcCAgaAACAa -3'
miRNA:   3'- -UUCuuGCGCGGgUCCGGGcGU--UUGUa -5'
5859 5' -57.9 NC_001806.1 + 61326 0.67 0.698537
Target:  5'- cGAGGGCGcCGCCCuc-CCCGCcGACAUu -3'
miRNA:   3'- -UUCUUGC-GCGGGuccGGGCGuUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 125768 0.68 0.688329
Target:  5'- cAGGAGCGCGCCCGcGGCcgccCCGCc----- -3'
miRNA:   3'- -UUCUUGCGCGGGU-CCG----GGCGuuugua -5'
5859 5' -57.9 NC_001806.1 + 87317 0.68 0.686282
Target:  5'- gAGGGACcaccggcgucgGCGCCCGGGCCgggggucccgggGCAAACAUc -3'
miRNA:   3'- -UUCUUG-----------CGCGGGUCCGGg-----------CGUUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 32648 0.68 0.682181
Target:  5'- cGGGGGCcgcuuuguggccccaGCGCCCcacGGGCCCGgGGGCGa -3'
miRNA:   3'- -UUCUUG---------------CGCGGG---UCCGGGCgUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 732 0.68 0.678073
Target:  5'- uGGGACgGCGCCCguGGGCCCG--GGCGg -3'
miRNA:   3'- uUCUUG-CGCGGG--UCCGGGCguUUGUa -5'
5859 5' -57.9 NC_001806.1 + 107817 0.68 0.678073
Target:  5'- cAGGccGCGgGCCCGGcGUCCGCGuggAGCAUg -3'
miRNA:   3'- uUCU--UGCgCGGGUC-CGGGCGU---UUGUA- -5'
5859 5' -57.9 NC_001806.1 + 62791 0.68 0.678073
Target:  5'- --aGGCuCGCCCGGGCCgGCAuguGCAa -3'
miRNA:   3'- uucUUGcGCGGGUCCGGgCGUu--UGUa -5'
5859 5' -57.9 NC_001806.1 + 129298 0.68 0.678073
Target:  5'- --cGACGCGCCCc-GCCUGCGcGCGUg -3'
miRNA:   3'- uucUUGCGCGGGucCGGGCGUuUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.