miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5860 3' -58.3 NC_001806.1 + 107477 0.66 0.820012
Target:  5'- uCGGCUCGGUgagGGccggGGGGGU-CGCc-- -3'
miRNA:   3'- -GCCGAGUCGa--CCa---CCCUCAuGCGcau -5'
5860 3' -58.3 NC_001806.1 + 76210 0.66 0.80263
Target:  5'- gCGGCUucugCGGCUGGcgGGGGGgcUGCu-- -3'
miRNA:   3'- -GCCGA----GUCGACCa-CCCUCauGCGcau -5'
5860 3' -58.3 NC_001806.1 + 88222 0.67 0.747107
Target:  5'- aGGUUCAGCaUGGcGGGGGUcgACG-GUAc -3'
miRNA:   3'- gCCGAGUCG-ACCaCCCUCA--UGCgCAU- -5'
5860 3' -58.3 NC_001806.1 + 35212 0.67 0.736483
Target:  5'- aGGCcCGGCUagacccacgggggGGUGGGGGUGgGCa-- -3'
miRNA:   3'- gCCGaGUCGA-------------CCACCCUCAUgCGcau -5'
5860 3' -58.3 NC_001806.1 + 114179 0.68 0.707984
Target:  5'- aGGCUgGGCUuuggucGGUGGGGGUuggAgGCGg- -3'
miRNA:   3'- gCCGAgUCGA------CCACCCUCA---UgCGCau -5'
5860 3' -58.3 NC_001806.1 + 117749 0.68 0.688007
Target:  5'- aCGGCcCGGggGGUGGGA--GCGCGg- -3'
miRNA:   3'- -GCCGaGUCgaCCACCCUcaUGCGCau -5'
5860 3' -58.3 NC_001806.1 + 69190 0.68 0.688007
Target:  5'- cCGGCagCAGCUGGaaggcgGGGGcGUucgagcGCGCGUAu -3'
miRNA:   3'- -GCCGa-GUCGACCa-----CCCU-CA------UGCGCAU- -5'
5860 3' -58.3 NC_001806.1 + 12300 0.69 0.63741
Target:  5'- -aGCUCGaacGCgGGUGGGAcgcccauauGUACGCGUAu -3'
miRNA:   3'- gcCGAGU---CGaCCACCCU---------CAUGCGCAU- -5'
5860 3' -58.3 NC_001806.1 + 4145 0.69 0.627246
Target:  5'- gCGGC-CGGCUGG-GGGGcUGCGUGa- -3'
miRNA:   3'- -GCCGaGUCGACCaCCCUcAUGCGCau -5'
5860 3' -58.3 NC_001806.1 + 96612 0.69 0.606937
Target:  5'- uGGC-CGGCUcGGUGGGGGUGguuuuguuuUGUGUGa -3'
miRNA:   3'- gCCGaGUCGA-CCACCCUCAU---------GCGCAU- -5'
5860 3' -58.3 NC_001806.1 + 118222 0.7 0.560597
Target:  5'- gGGCUCAGUgggggcguggggugGGUGGGAGaAgGCGa- -3'
miRNA:   3'- gCCGAGUCGa-------------CCACCCUCaUgCGCau -5'
5860 3' -58.3 NC_001806.1 + 74326 0.74 0.342331
Target:  5'- gGGCcCAGCUGGaaUGGGGGggugACGCGg- -3'
miRNA:   3'- gCCGaGUCGACC--ACCCUCa---UGCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.