Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5860 | 3' | -58.3 | NC_001806.1 | + | 74326 | 0.74 | 0.342331 |
Target: 5'- gGGCcCAGCUGGaaUGGGGGggugACGCGg- -3' miRNA: 3'- gCCGaGUCGACC--ACCCUCa---UGCGCau -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 118222 | 0.7 | 0.560597 |
Target: 5'- gGGCUCAGUgggggcguggggugGGUGGGAGaAgGCGa- -3' miRNA: 3'- gCCGAGUCGa-------------CCACCCUCaUgCGCau -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 96612 | 0.69 | 0.606937 |
Target: 5'- uGGC-CGGCUcGGUGGGGGUGguuuuguuuUGUGUGa -3' miRNA: 3'- gCCGaGUCGA-CCACCCUCAU---------GCGCAU- -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 4145 | 0.69 | 0.627246 |
Target: 5'- gCGGC-CGGCUGG-GGGGcUGCGUGa- -3' miRNA: 3'- -GCCGaGUCGACCaCCCUcAUGCGCau -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 12300 | 0.69 | 0.63741 |
Target: 5'- -aGCUCGaacGCgGGUGGGAcgcccauauGUACGCGUAu -3' miRNA: 3'- gcCGAGU---CGaCCACCCU---------CAUGCGCAU- -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 117749 | 0.68 | 0.688007 |
Target: 5'- aCGGCcCGGggGGUGGGA--GCGCGg- -3' miRNA: 3'- -GCCGaGUCgaCCACCCUcaUGCGCau -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 69190 | 0.68 | 0.688007 |
Target: 5'- cCGGCagCAGCUGGaaggcgGGGGcGUucgagcGCGCGUAu -3' miRNA: 3'- -GCCGa-GUCGACCa-----CCCU-CA------UGCGCAU- -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 114179 | 0.68 | 0.707984 |
Target: 5'- aGGCUgGGCUuuggucGGUGGGGGUuggAgGCGg- -3' miRNA: 3'- gCCGAgUCGA------CCACCCUCA---UgCGCau -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 35212 | 0.67 | 0.736483 |
Target: 5'- aGGCcCGGCUagacccacgggggGGUGGGGGUGgGCa-- -3' miRNA: 3'- gCCGaGUCGA-------------CCACCCUCAUgCGcau -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 88222 | 0.67 | 0.747107 |
Target: 5'- aGGUUCAGCaUGGcGGGGGUcgACG-GUAc -3' miRNA: 3'- gCCGAGUCG-ACCaCCCUCA--UGCgCAU- -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 76210 | 0.66 | 0.80263 |
Target: 5'- gCGGCUucugCGGCUGGcgGGGGGgcUGCu-- -3' miRNA: 3'- -GCCGA----GUCGACCa-CCCUCauGCGcau -5' |
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5860 | 3' | -58.3 | NC_001806.1 | + | 107477 | 0.66 | 0.820012 |
Target: 5'- uCGGCUCGGUgagGGccggGGGGGU-CGCc-- -3' miRNA: 3'- -GCCGAGUCGa--CCa---CCCUCAuGCGcau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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