miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5860 5' -56 NC_001806.1 + 91001 0.66 0.904224
Target:  5'- cGUugACGaccGCCCCgGCguaGGAGGUGc -3'
miRNA:   3'- uCAugUGCau-CGGGGgUGg--CUUCCAC- -5'
5860 5' -56 NC_001806.1 + 94956 0.66 0.897856
Target:  5'- --cGCGCcagGGCCCCCACgcacgCGAGGuGUGg -3'
miRNA:   3'- ucaUGUGca-UCGGGGGUG-----GCUUC-CAC- -5'
5860 5' -56 NC_001806.1 + 123648 0.66 0.897856
Target:  5'- --gGgGCGUGGUCCCCACUGAcucauacgcAGGc- -3'
miRNA:   3'- ucaUgUGCAUCGGGGGUGGCU---------UCCac -5'
5860 5' -56 NC_001806.1 + 4909 0.66 0.891257
Target:  5'- gGGUGCGuCGccgcccucuUGGCCCCUGCCGGcgcgAGGg- -3'
miRNA:   3'- -UCAUGU-GC---------AUCGGGGGUGGCU----UCCac -5'
5860 5' -56 NC_001806.1 + 140032 0.66 0.891257
Target:  5'- uAGUGcCACagcucuacGCCCCCAUCGuaguAGGUGg -3'
miRNA:   3'- -UCAU-GUGcau-----CGGGGGUGGCu---UCCAC- -5'
5860 5' -56 NC_001806.1 + 88107 0.66 0.889233
Target:  5'- --cGCGCGUGGCCCggcaggccaaaaagCCGgCGAugcGGGUGu -3'
miRNA:   3'- ucaUGUGCAUCGGG--------------GGUgGCU---UCCAC- -5'
5860 5' -56 NC_001806.1 + 34245 0.66 0.88443
Target:  5'- cGUACACGUacaaaucgggGGCCaugaggCCGCUGuuGGUGg -3'
miRNA:   3'- uCAUGUGCA----------UCGGg-----GGUGGCuuCCAC- -5'
5860 5' -56 NC_001806.1 + 81940 0.66 0.88443
Target:  5'- --aGCAUGUAcGCCCUgGCCGcccggGGGGUGc -3'
miRNA:   3'- ucaUGUGCAU-CGGGGgUGGC-----UUCCAC- -5'
5860 5' -56 NC_001806.1 + 55890 0.67 0.870111
Target:  5'- -aUGCGCcagGgcGCCCCCGCgCGggGGc- -3'
miRNA:   3'- ucAUGUG---CauCGGGGGUG-GCuuCCac -5'
5860 5' -56 NC_001806.1 + 138622 0.67 0.862628
Target:  5'- uGGUACACGc-GCCggaCCC-CCGGAGGg- -3'
miRNA:   3'- -UCAUGUGCauCGG---GGGuGGCUUCCac -5'
5860 5' -56 NC_001806.1 + 76834 0.67 0.862628
Target:  5'- aGGUGCGCcgGGCCgCCaaccaACCGGAGGg- -3'
miRNA:   3'- -UCAUGUGcaUCGG-GGg----UGGCUUCCac -5'
5860 5' -56 NC_001806.1 + 75107 0.67 0.854938
Target:  5'- cGGgggGCGCGUGGCCCaacaCGCCGAc---- -3'
miRNA:   3'- -UCa--UGUGCAUCGGGg---GUGGCUuccac -5'
5860 5' -56 NC_001806.1 + 112450 0.67 0.854938
Target:  5'- uGGuUGCGCc-AGCCCCCGuuGggGGg- -3'
miRNA:   3'- -UC-AUGUGcaUCGGGGGUggCuuCCac -5'
5860 5' -56 NC_001806.1 + 3852 0.67 0.847045
Target:  5'- gGGUGgGCGacagGGCCCUCACCGugugcccccccAGGGUc -3'
miRNA:   3'- -UCAUgUGCa---UCGGGGGUGGC-----------UUCCAc -5'
5860 5' -56 NC_001806.1 + 128541 0.68 0.838958
Target:  5'- cGGUGCGcCGggcccGCCCCCGCCGcccAGGc- -3'
miRNA:   3'- -UCAUGU-GCau---CGGGGGUGGCu--UCCac -5'
5860 5' -56 NC_001806.1 + 149231 0.68 0.830682
Target:  5'- cGGUGCGC-UGGCCgCCGCCGccagcAGGGg- -3'
miRNA:   3'- -UCAUGUGcAUCGGgGGUGGC-----UUCCac -5'
5860 5' -56 NC_001806.1 + 148449 0.68 0.795852
Target:  5'- cGUGCGCcaGGCCCCaGCCGAAGcGg- -3'
miRNA:   3'- uCAUGUGcaUCGGGGgUGGCUUC-Cac -5'
5860 5' -56 NC_001806.1 + 60875 0.69 0.786754
Target:  5'- gAGggACACGUGGUgCCCGgguUCGAGGGUc -3'
miRNA:   3'- -UCa-UGUGCAUCGgGGGU---GGCUUCCAc -5'
5860 5' -56 NC_001806.1 + 14062 0.69 0.758661
Target:  5'- cGUACAUGgccaAGCUCCaCGCCuaccuGAAGGUGa -3'
miRNA:   3'- uCAUGUGCa---UCGGGG-GUGG-----CUUCCAC- -5'
5860 5' -56 NC_001806.1 + 17614 0.7 0.72956
Target:  5'- uGUGCACGUGGUCCUCguugGCCGucAGGa- -3'
miRNA:   3'- uCAUGUGCAUCGGGGG----UGGCu-UCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.