Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5860 | 5' | -56 | NC_001806.1 | + | 126831 | 0.72 | 0.58761 |
Target: 5'- uGGUGCGCG-GGCgCCC-CCGGAGGg- -3' miRNA: 3'- -UCAUGUGCaUCGgGGGuGGCUUCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 62728 | 0.71 | 0.638685 |
Target: 5'- -cUGCGCGgcGCCCCgGCCGgcGGc- -3' miRNA: 3'- ucAUGUGCauCGGGGgUGGCuuCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 63346 | 0.71 | 0.672383 |
Target: 5'- cGUACACGUgaaagacGGUgacggugggguugaaCCCCGCCGggGcGUGg -3' miRNA: 3'- uCAUGUGCA-------UCG---------------GGGGUGGCuuC-CAC- -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 17614 | 0.7 | 0.72956 |
Target: 5'- uGUGCACGUGGUCCUCguugGCCGucAGGa- -3' miRNA: 3'- uCAUGUGCAUCGGGGG----UGGCu-UCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 14062 | 0.69 | 0.758661 |
Target: 5'- cGUACAUGgccaAGCUCCaCGCCuaccuGAAGGUGa -3' miRNA: 3'- uCAUGUGCa---UCGGGG-GUGG-----CUUCCAC- -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 60875 | 0.69 | 0.786754 |
Target: 5'- gAGggACACGUGGUgCCCGgguUCGAGGGUc -3' miRNA: 3'- -UCa-UGUGCAUCGgGGGU---GGCUUCCAc -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 148449 | 0.68 | 0.795852 |
Target: 5'- cGUGCGCcaGGCCCCaGCCGAAGcGg- -3' miRNA: 3'- uCAUGUGcaUCGGGGgUGGCUUC-Cac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 149231 | 0.68 | 0.830682 |
Target: 5'- cGGUGCGC-UGGCCgCCGCCGccagcAGGGg- -3' miRNA: 3'- -UCAUGUGcAUCGGgGGUGGC-----UUCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 128541 | 0.68 | 0.838958 |
Target: 5'- cGGUGCGcCGggcccGCCCCCGCCGcccAGGc- -3' miRNA: 3'- -UCAUGU-GCau---CGGGGGUGGCu--UCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 138622 | 0.67 | 0.862628 |
Target: 5'- uGGUACACGc-GCCggaCCC-CCGGAGGg- -3' miRNA: 3'- -UCAUGUGCauCGG---GGGuGGCUUCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 3852 | 0.67 | 0.847045 |
Target: 5'- gGGUGgGCGacagGGCCCUCACCGugugcccccccAGGGUc -3' miRNA: 3'- -UCAUgUGCa---UCGGGGGUGGC-----------UUCCAc -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 112450 | 0.67 | 0.854938 |
Target: 5'- uGGuUGCGCc-AGCCCCCGuuGggGGg- -3' miRNA: 3'- -UC-AUGUGcaUCGGGGGUggCuuCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 75107 | 0.67 | 0.854938 |
Target: 5'- cGGgggGCGCGUGGCCCaacaCGCCGAc---- -3' miRNA: 3'- -UCa--UGUGCAUCGGGg---GUGGCUuccac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 76834 | 0.67 | 0.862628 |
Target: 5'- aGGUGCGCcgGGCCgCCaaccaACCGGAGGg- -3' miRNA: 3'- -UCAUGUGcaUCGG-GGg----UGGCUUCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 55890 | 0.67 | 0.870111 |
Target: 5'- -aUGCGCcagGgcGCCCCCGCgCGggGGc- -3' miRNA: 3'- ucAUGUG---CauCGGGGGUG-GCuuCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 123648 | 0.66 | 0.897856 |
Target: 5'- --gGgGCGUGGUCCCCACUGAcucauacgcAGGc- -3' miRNA: 3'- ucaUgUGCAUCGGGGGUGGCU---------UCCac -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 81940 | 0.66 | 0.88443 |
Target: 5'- --aGCAUGUAcGCCCUgGCCGcccggGGGGUGc -3' miRNA: 3'- ucaUGUGCAU-CGGGGgUGGC-----UUCCAC- -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 34245 | 0.66 | 0.88443 |
Target: 5'- cGUACACGUacaaaucgggGGCCaugaggCCGCUGuuGGUGg -3' miRNA: 3'- uCAUGUGCA----------UCGGg-----GGUGGCuuCCAC- -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 88107 | 0.66 | 0.889233 |
Target: 5'- --cGCGCGUGGCCCggcaggccaaaaagCCGgCGAugcGGGUGu -3' miRNA: 3'- ucaUGUGCAUCGGG--------------GGUgGCU---UCCAC- -5' |
|||||||
5860 | 5' | -56 | NC_001806.1 | + | 140032 | 0.66 | 0.891257 |
Target: 5'- uAGUGcCACagcucuacGCCCCCAUCGuaguAGGUGg -3' miRNA: 3'- -UCAU-GUGcau-----CGGGGGUGGCu---UCCAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home