miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5864 3' -60.5 NC_001806.1 + 7257 0.66 0.784399
Target:  5'- cCCGGCCcGGGGCCccacaACGGCCcggCGc -3'
miRNA:   3'- -GGCUGGcCCCCGGcua--UGUCGGca-GC- -5'
5864 3' -60.5 NC_001806.1 + 117700 0.66 0.784399
Target:  5'- cCCGGCCGccGGGGagCGuugucGCCGUCGg -3'
miRNA:   3'- -GGCUGGC--CCCCg-GCuauguCGGCAGC- -5'
5864 3' -60.5 NC_001806.1 + 65523 0.66 0.784399
Target:  5'- -gGGcCCGGGGGCgCGcAUGuCGGCCGcCu -3'
miRNA:   3'- ggCU-GGCCCCCG-GC-UAU-GUCGGCaGc -5'
5864 3' -60.5 NC_001806.1 + 125847 0.66 0.775581
Target:  5'- cCCGGCCGcccGGGCCcacggGC-GCCGUCc -3'
miRNA:   3'- -GGCUGGCc--CCCGGcua--UGuCGGCAGc -5'
5864 3' -60.5 NC_001806.1 + 146070 0.66 0.775581
Target:  5'- gCgGACCGGGaGCgGGagucgcagAgGGCCGUCGg -3'
miRNA:   3'- -GgCUGGCCCcCGgCUa-------UgUCGGCAGC- -5'
5864 3' -60.5 NC_001806.1 + 131635 0.66 0.766646
Target:  5'- -gGGCCGGGGGuUCGAccaACgGGCCG-CGg -3'
miRNA:   3'- ggCUGGCCCCC-GGCUa--UG-UCGGCaGC- -5'
5864 3' -60.5 NC_001806.1 + 149329 0.66 0.766646
Target:  5'- gCCGccuCCGGGcGGCCGGgccgGGCCGg-- -3'
miRNA:   3'- -GGCu--GGCCC-CCGGCUaug-UCGGCagc -5'
5864 3' -60.5 NC_001806.1 + 149276 0.66 0.766646
Target:  5'- gCGGCgCGGGGaGgCGGcgGCGGCCGcCa -3'
miRNA:   3'- gGCUG-GCCCC-CgGCUa-UGUCGGCaGc -5'
5864 3' -60.5 NC_001806.1 + 115279 0.66 0.766646
Target:  5'- gCCGugCacguacggGGGGGCgaCGAUGugacUGGCCGUCa -3'
miRNA:   3'- -GGCugG--------CCCCCG--GCUAU----GUCGGCAGc -5'
5864 3' -60.5 NC_001806.1 + 108769 0.66 0.766646
Target:  5'- aCGAUCGacGGGGCCGugGCGGCCcaUCa -3'
miRNA:   3'- gGCUGGC--CCCCGGCuaUGUCGGc-AGc -5'
5864 3' -60.5 NC_001806.1 + 92250 0.66 0.766646
Target:  5'- aCGGCCGGGuccggaGCCGc-GCuGCCGUCc -3'
miRNA:   3'- gGCUGGCCCc-----CGGCuaUGuCGGCAGc -5'
5864 3' -60.5 NC_001806.1 + 149545 0.66 0.757604
Target:  5'- gCCGcCCaGGGGGUCGggGCccucggcgGGCCGgcgCGa -3'
miRNA:   3'- -GGCuGG-CCCCCGGCuaUG--------UCGGCa--GC- -5'
5864 3' -60.5 NC_001806.1 + 117855 0.66 0.757604
Target:  5'- gUGGCCGGgccGGGCCGGgccgGGCCGggcCGg -3'
miRNA:   3'- gGCUGGCC---CCCGGCUaug-UCGGCa--GC- -5'
5864 3' -60.5 NC_001806.1 + 87420 0.66 0.757604
Target:  5'- gUGGCCGGGGGuCCGAa--AGCCc--- -3'
miRNA:   3'- gGCUGGCCCCC-GGCUaugUCGGcagc -5'
5864 3' -60.5 NC_001806.1 + 4063 0.66 0.757604
Target:  5'- uCCGGCgGGGGGCgggCGGUAC-GuaGUCu -3'
miRNA:   3'- -GGCUGgCCCCCG---GCUAUGuCggCAGc -5'
5864 3' -60.5 NC_001806.1 + 128730 0.66 0.757604
Target:  5'- cCCGACCcccuGGGcGGCUGGcggcgGCAGCCccCGg -3'
miRNA:   3'- -GGCUGG----CCC-CCGGCUa----UGUCGGcaGC- -5'
5864 3' -60.5 NC_001806.1 + 58998 0.66 0.757604
Target:  5'- gCGAgcagcuCCGGGGcauuaucuCCGAgggcgggGCGGCCGUCGc -3'
miRNA:   3'- gGCU------GGCCCCc-------GGCUa------UGUCGGCAGC- -5'
5864 3' -60.5 NC_001806.1 + 96283 0.66 0.756694
Target:  5'- aCCGGauGGGGGUgugcguuCGAUGCGGCC-UCc -3'
miRNA:   3'- -GGCUggCCCCCG-------GCUAUGUCGGcAGc -5'
5864 3' -60.5 NC_001806.1 + 113632 0.66 0.754871
Target:  5'- aCCGGCCGGGuGGUgGAUguccuuauacccguGguGCCGgggcCGg -3'
miRNA:   3'- -GGCUGGCCC-CCGgCUA--------------UguCGGCa---GC- -5'
5864 3' -60.5 NC_001806.1 + 45741 0.66 0.748461
Target:  5'- aCGACgGGGGaGCUGGUGCucgggugcgauGCCG-CGc -3'
miRNA:   3'- gGCUGgCCCC-CGGCUAUGu----------CGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.