miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5864 5' -57.7 NC_001806.1 + 75347 0.66 0.861857
Target:  5'- uCUCGAgGA-GGCCGa-GGCGGAguGg -3'
miRNA:   3'- -GAGCUgCUaCCGGUggUCGCCUguCa -5'
5864 5' -57.7 NC_001806.1 + 112696 0.66 0.861857
Target:  5'- -gUGGCcggGGCCACCAucuuGUGGGCGGg -3'
miRNA:   3'- gaGCUGcuaCCGGUGGU----CGCCUGUCa -5'
5864 5' -57.7 NC_001806.1 + 74995 0.66 0.854239
Target:  5'- uUCGACGcgGUGGCCggggACCuGGCcccauGGGCGGUg -3'
miRNA:   3'- gAGCUGC--UACCGG----UGG-UCG-----CCUGUCA- -5'
5864 5' -57.7 NC_001806.1 + 45239 0.66 0.854239
Target:  5'- gCUUGcCGGguUGGCCGCCcGCGGggccGCGGg -3'
miRNA:   3'- -GAGCuGCU--ACCGGUGGuCGCC----UGUCa -5'
5864 5' -57.7 NC_001806.1 + 64197 0.66 0.853466
Target:  5'- -gCGugGGcaggccccUGGCCGCCAGCucguucaGGugGGa -3'
miRNA:   3'- gaGCugCU--------ACCGGUGGUCG-------CCugUCa -5'
5864 5' -57.7 NC_001806.1 + 54204 0.66 0.851915
Target:  5'- gCUCGGCGAcgugaUGGCCgucuccacgugcguGCCGgucgccGCGGACAa- -3'
miRNA:   3'- -GAGCUGCU-----ACCGG--------------UGGU------CGCCUGUca -5'
5864 5' -57.7 NC_001806.1 + 15733 0.66 0.846424
Target:  5'- gCUUGACGGgccgcucgGGCCGCCcGGCGcaaaGCAGg -3'
miRNA:   3'- -GAGCUGCUa-------CCGGUGG-UCGCc---UGUCa -5'
5864 5' -57.7 NC_001806.1 + 145645 0.66 0.846424
Target:  5'- cCUCGuCGA-GGCgACCGGCGG-CGa- -3'
miRNA:   3'- -GAGCuGCUaCCGgUGGUCGCCuGUca -5'
5864 5' -57.7 NC_001806.1 + 103110 0.66 0.838419
Target:  5'- cCUCGcCcGUGGCggacgaGCCAGCGGGCGa- -3'
miRNA:   3'- -GAGCuGcUACCGg-----UGGUCGCCUGUca -5'
5864 5' -57.7 NC_001806.1 + 110822 0.66 0.830231
Target:  5'- gUCGG-GGUGcGCCGCCgcuucGGCGGACAc- -3'
miRNA:   3'- gAGCUgCUAC-CGGUGG-----UCGCCUGUca -5'
5864 5' -57.7 NC_001806.1 + 45948 0.66 0.830231
Target:  5'- -gCGACGgcGaGCCACCcgAGCGGGCc-- -3'
miRNA:   3'- gaGCUGCuaC-CGGUGG--UCGCCUGuca -5'
5864 5' -57.7 NC_001806.1 + 110902 0.66 0.830231
Target:  5'- -cCGGCauccaGGCCGCCAGgGGGCAu- -3'
miRNA:   3'- gaGCUGcua--CCGGUGGUCgCCUGUca -5'
5864 5' -57.7 NC_001806.1 + 10460 0.66 0.829403
Target:  5'- -cCGACGAUuauauucGGCCAggaGGUGGGCGGUu -3'
miRNA:   3'- gaGCUGCUA-------CCGGUgg-UCGCCUGUCA- -5'
5864 5' -57.7 NC_001806.1 + 122385 0.66 0.821867
Target:  5'- cCUCGGCGcccaucgGGCCACaCGGCaG-CAGUa -3'
miRNA:   3'- -GAGCUGCua-----CCGGUG-GUCGcCuGUCA- -5'
5864 5' -57.7 NC_001806.1 + 77731 0.66 0.821867
Target:  5'- -gCGGCccugGGCCAgCAGCuGGACAGc -3'
miRNA:   3'- gaGCUGcua-CCGGUgGUCG-CCUGUCa -5'
5864 5' -57.7 NC_001806.1 + 149878 0.67 0.813335
Target:  5'- gUCGGgGAUcuggcgcauccaGGCCGCCAuGCGGcGCAGc -3'
miRNA:   3'- gAGCUgCUA------------CCGGUGGU-CGCC-UGUCa -5'
5864 5' -57.7 NC_001806.1 + 959 0.67 0.804643
Target:  5'- -gCGGCGGUgGGCCgggccucuggcGCCGGCucGGGCGGg -3'
miRNA:   3'- gaGCUGCUA-CCGG-----------UGGUCG--CCUGUCa -5'
5864 5' -57.7 NC_001806.1 + 149682 0.67 0.795797
Target:  5'- -aUGAgGGccGGUCGCCAGgGGACGGg -3'
miRNA:   3'- gaGCUgCUa-CCGGUGGUCgCCUGUCa -5'
5864 5' -57.7 NC_001806.1 + 32837 0.67 0.777681
Target:  5'- cCUCG-CGuUGGU--UCAGCGGGCAGUg -3'
miRNA:   3'- -GAGCuGCuACCGguGGUCGCCUGUCA- -5'
5864 5' -57.7 NC_001806.1 + 124410 0.67 0.777681
Target:  5'- --gGACGG-GGCCGCCccGCGGugGGc -3'
miRNA:   3'- gagCUGCUaCCGGUGGu-CGCCugUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.