miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5864 5' -57.7 NC_001806.1 + 699 0.68 0.739993
Target:  5'- -gCGGCGggGGCCGCgauggCGGCGGcgGCGGg -3'
miRNA:   3'- gaGCUGCuaCCGGUG-----GUCGCC--UGUCa -5'
5864 5' -57.7 NC_001806.1 + 834 0.71 0.540344
Target:  5'- --aGGCGggGGcCCACCGGCGGGgGGc -3'
miRNA:   3'- gagCUGCuaCC-GGUGGUCGCCUgUCa -5'
5864 5' -57.7 NC_001806.1 + 959 0.67 0.804643
Target:  5'- -gCGGCGGUgGGCCgggccucuggcGCCGGCucGGGCGGg -3'
miRNA:   3'- gaGCUGCUA-CCGG-----------UGGUCG--CCUGUCa -5'
5864 5' -57.7 NC_001806.1 + 10460 0.66 0.829403
Target:  5'- -cCGACGAUuauauucGGCCAggaGGUGGGCGGUu -3'
miRNA:   3'- gaGCUGCUA-------CCGGUgg-UCGCCUGUCA- -5'
5864 5' -57.7 NC_001806.1 + 10834 0.69 0.680883
Target:  5'- -gCGGCGcgcGGCCaACCGGCGGAUAa- -3'
miRNA:   3'- gaGCUGCua-CCGG-UGGUCGCCUGUca -5'
5864 5' -57.7 NC_001806.1 + 15733 0.66 0.846424
Target:  5'- gCUUGACGGgccgcucgGGCCGCCcGGCGcaaaGCAGg -3'
miRNA:   3'- -GAGCUGCUa-------CCGGUGG-UCGCc---UGUCa -5'
5864 5' -57.7 NC_001806.1 + 15870 0.68 0.739993
Target:  5'- -gCGACcGUGGCCAgCUGGCGGGuCAGc -3'
miRNA:   3'- gaGCUGcUACCGGU-GGUCGCCU-GUCa -5'
5864 5' -57.7 NC_001806.1 + 17334 0.71 0.580056
Target:  5'- -cCGGCGAUGGCCugCuugaGGAUGGUg -3'
miRNA:   3'- gaGCUGCUACCGGugGucg-CCUGUCA- -5'
5864 5' -57.7 NC_001806.1 + 32837 0.67 0.777681
Target:  5'- cCUCG-CGuUGGU--UCAGCGGGCAGUg -3'
miRNA:   3'- -GAGCuGCuACCGguGGUCGCCUGUCA- -5'
5864 5' -57.7 NC_001806.1 + 36753 0.71 0.560103
Target:  5'- uUCGGCGGUGuccacggccaccGCCGCCAGCGacguACAGUu -3'
miRNA:   3'- gAGCUGCUAC------------CGGUGGUCGCc---UGUCA- -5'
5864 5' -57.7 NC_001806.1 + 41034 0.71 0.540344
Target:  5'- cCUCGAUgugGGUGGCgG-CGGCGGACAGc -3'
miRNA:   3'- -GAGCUG---CUACCGgUgGUCGCCUGUCa -5'
5864 5' -57.7 NC_001806.1 + 41556 0.72 0.520825
Target:  5'- gUCGACGA-GGCCGCCuuCGGGgGGg -3'
miRNA:   3'- gAGCUGCUaCCGGUGGucGCCUgUCa -5'
5864 5' -57.7 NC_001806.1 + 45239 0.66 0.854239
Target:  5'- gCUUGcCGGguUGGCCGCCcGCGGggccGCGGg -3'
miRNA:   3'- -GAGCuGCU--ACCGGUGGuCGCC----UGUCa -5'
5864 5' -57.7 NC_001806.1 + 45948 0.66 0.830231
Target:  5'- -gCGACGgcGaGCCACCcgAGCGGGCc-- -3'
miRNA:   3'- gaGCUGCuaC-CGGUGG--UCGCCUGuca -5'
5864 5' -57.7 NC_001806.1 + 48721 0.68 0.720563
Target:  5'- cCUCG-CGggGGCCGCUuaAGCGGugGu- -3'
miRNA:   3'- -GAGCuGCuaCCGGUGG--UCGCCugUca -5'
5864 5' -57.7 NC_001806.1 + 52620 0.72 0.530552
Target:  5'- --gGGCGGUGGCgGgCCuGGCGGGCAGg -3'
miRNA:   3'- gagCUGCUACCGgU-GG-UCGCCUGUCa -5'
5864 5' -57.7 NC_001806.1 + 54204 0.66 0.851915
Target:  5'- gCUCGGCGAcgugaUGGCCgucuccacgugcguGCCGgucgccGCGGACAa- -3'
miRNA:   3'- -GAGCUGCU-----ACCGG--------------UGGU------CGCCUGUca -5'
5864 5' -57.7 NC_001806.1 + 57620 0.69 0.690883
Target:  5'- -gCGACGAUcgcccGCCGCCuGGCGGACcGUa -3'
miRNA:   3'- gaGCUGCUAc----CGGUGG-UCGCCUGuCA- -5'
5864 5' -57.7 NC_001806.1 + 61246 0.68 0.739993
Target:  5'- -aCGGCGgcGGCaaggGCgCGGCGGGCGGg -3'
miRNA:   3'- gaGCUGCuaCCGg---UG-GUCGCCUGUCa -5'
5864 5' -57.7 NC_001806.1 + 64197 0.66 0.853466
Target:  5'- -gCGugGGcaggccccUGGCCGCCAGCucguucaGGugGGa -3'
miRNA:   3'- gaGCugCU--------ACCGGUGGUCG-------CCugUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.