miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5866 3' -62 NC_001806.1 + 88132 0.65 0.678147
Target:  5'- cGCCCCagggcgaugugGCGCauGCC-GCGCGUGGCc -3'
miRNA:   3'- -CGGGGgua--------CGCG--CGGuCGUGCGCUGc -5'
5866 3' -62 NC_001806.1 + 29429 0.66 0.672302
Target:  5'- cGCCCCUuuaGuUGCGCCGGCAC-CaGGCu -3'
miRNA:   3'- -CGGGGGua-C-GCGCGGUCGUGcG-CUGc -5'
5866 3' -62 NC_001806.1 + 109495 0.66 0.672302
Target:  5'- gGgUCCCGUGCGCcaggGCguccugUAGCGCGgCGACGu -3'
miRNA:   3'- -CgGGGGUACGCG----CG------GUCGUGC-GCUGC- -5'
5866 3' -62 NC_001806.1 + 54454 0.66 0.672302
Target:  5'- cGCCCCCGccGCccgGgGCCAGCgccaACGCGucCGu -3'
miRNA:   3'- -CGGGGGUa-CG---CgCGGUCG----UGCGCu-GC- -5'
5866 3' -62 NC_001806.1 + 99230 0.66 0.672302
Target:  5'- aGCCaCCCAcGC-CGCCucGGCcCGCGaACGg -3'
miRNA:   3'- -CGG-GGGUaCGcGCGG--UCGuGCGC-UGC- -5'
5866 3' -62 NC_001806.1 + 49662 0.66 0.671327
Target:  5'- cGgCCCCGUGCGUGUuucgguaCAGCAgGUagaGACa -3'
miRNA:   3'- -CgGGGGUACGCGCG-------GUCGUgCG---CUGc -5'
5866 3' -62 NC_001806.1 + 32658 0.66 0.670351
Target:  5'- aGCCCCCcgGCGgGggccgcuuuguggccCCAGCGCcccacgggcccggggGCGAgGa -3'
miRNA:   3'- -CGGGGGuaCGCgC---------------GGUCGUG---------------CGCUgC- -5'
5866 3' -62 NC_001806.1 + 119114 0.66 0.662537
Target:  5'- gGCCCCuCGUccCGgGCC-GUACGCGGCc -3'
miRNA:   3'- -CGGGG-GUAc-GCgCGGuCGUGCGCUGc -5'
5866 3' -62 NC_001806.1 + 137775 0.66 0.662537
Target:  5'- -gCCCCAgaugccagacUGCGCGCagAGaCAuCGCGACa -3'
miRNA:   3'- cgGGGGU----------ACGCGCGg-UC-GU-GCGCUGc -5'
5866 3' -62 NC_001806.1 + 55792 0.66 0.662537
Target:  5'- uUCCCCcgGCaCGCCugGGguCGCGGCc -3'
miRNA:   3'- cGGGGGuaCGcGCGG--UCguGCGCUGc -5'
5866 3' -62 NC_001806.1 + 109098 0.66 0.659603
Target:  5'- uGCCCCauUGCGUccgcgcgcccaaggGCCAGUAcccgccCGCGAUGg -3'
miRNA:   3'- -CGGGGguACGCG--------------CGGUCGU------GCGCUGC- -5'
5866 3' -62 NC_001806.1 + 36707 0.66 0.656667
Target:  5'- cGCCCCCcgGgGUGCC-GCGaacucguggaggaccCGUGugGc -3'
miRNA:   3'- -CGGGGGuaCgCGCGGuCGU---------------GCGCugC- -5'
5866 3' -62 NC_001806.1 + 149608 0.66 0.65275
Target:  5'- gGCCUCCA-GgGCGgCGGC-CGCGgGCGc -3'
miRNA:   3'- -CGGGGGUaCgCGCgGUCGuGCGC-UGC- -5'
5866 3' -62 NC_001806.1 + 122420 0.66 0.65275
Target:  5'- aGCCCCCca----GCCGGC-CGCGGCu -3'
miRNA:   3'- -CGGGGGuacgcgCGGUCGuGCGCUGc -5'
5866 3' -62 NC_001806.1 + 101067 0.66 0.65275
Target:  5'- cGCCCCgAUG-GC-CCuGgACGCGGCa -3'
miRNA:   3'- -CGGGGgUACgCGcGGuCgUGCGCUGc -5'
5866 3' -62 NC_001806.1 + 150543 0.66 0.65275
Target:  5'- cGCCgCCcgGC-CGuCCAGCGC-CGGCa -3'
miRNA:   3'- -CGGgGGuaCGcGC-GGUCGUGcGCUGc -5'
5866 3' -62 NC_001806.1 + 74134 0.66 0.65275
Target:  5'- uCCCCCGUGCGUuUCAGaACGCaGCa -3'
miRNA:   3'- cGGGGGUACGCGcGGUCgUGCGcUGc -5'
5866 3' -62 NC_001806.1 + 43723 0.66 0.65275
Target:  5'- gGCCCgCGUGCG-GCUGGC-CGCGcccgccgcuccGCGg -3'
miRNA:   3'- -CGGGgGUACGCgCGGUCGuGCGC-----------UGC- -5'
5866 3' -62 NC_001806.1 + 129836 0.66 0.642948
Target:  5'- gGCCgCUUcgGCugGgGCCuggcGCACGCGGCGg -3'
miRNA:   3'- -CGG-GGGuaCG--CgCGGu---CGUGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 100979 0.66 0.642948
Target:  5'- aGCUCCC-UGCG-GCUGGCGCGgugccUGACGc -3'
miRNA:   3'- -CGGGGGuACGCgCGGUCGUGC-----GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.