miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5866 3' -62 NC_001806.1 + 131601 0.83 0.059128
Target:  5'- gGCCCCCG-GCGUGCCGGCGuCGgGGCGg -3'
miRNA:   3'- -CGGGGGUaCGCGCGGUCGU-GCgCUGC- -5'
5866 3' -62 NC_001806.1 + 42061 0.8 0.098687
Target:  5'- cGUCCUCGUGCGUGCC-GCACGCGGUGg -3'
miRNA:   3'- -CGGGGGUACGCGCGGuCGUGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 101010 0.79 0.12374
Target:  5'- cGUCaCCAUGCaGCGCCGGaCGCGCGGCGc -3'
miRNA:   3'- -CGGgGGUACG-CGCGGUC-GUGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 16647 0.78 0.133329
Target:  5'- gGCCCCCGcuguUGCGCGCCGGagcuCGCGGuCGc -3'
miRNA:   3'- -CGGGGGU----ACGCGCGGUCgu--GCGCU-GC- -5'
5866 3' -62 NC_001806.1 + 7417 0.78 0.136675
Target:  5'- gGgCCCCGUccggacccGCuCGCCGGCACGCGACGc -3'
miRNA:   3'- -CgGGGGUA--------CGcGCGGUCGUGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 129727 0.77 0.150841
Target:  5'- cGCCCCUGUugGCGCGCgAGaACGCGGCGc -3'
miRNA:   3'- -CGGGGGUA--CGCGCGgUCgUGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 66283 0.77 0.154586
Target:  5'- cGCCUCCcgGgGgGUCGGCAgGCGACGg -3'
miRNA:   3'- -CGGGGGuaCgCgCGGUCGUgCGCUGC- -5'
5866 3' -62 NC_001806.1 + 8865 0.76 0.183231
Target:  5'- cGCUCCCcgGCG-GCCGGguCGCGGCu -3'
miRNA:   3'- -CGGGGGuaCGCgCGGUCguGCGCUGc -5'
5866 3' -62 NC_001806.1 + 128442 0.76 0.192239
Target:  5'- gGCCCCC-UGCGCGCCucgGGCcCGCuGCGc -3'
miRNA:   3'- -CGGGGGuACGCGCGG---UCGuGCGcUGC- -5'
5866 3' -62 NC_001806.1 + 91784 0.75 0.196887
Target:  5'- gGCCCCCucUGC-CGCCGGC-CGcCGGCGg -3'
miRNA:   3'- -CGGGGGu-ACGcGCGGUCGuGC-GCUGC- -5'
5866 3' -62 NC_001806.1 + 148571 0.75 0.198773
Target:  5'- gGCCCCCGUcagcgccgcguucucGCGCGCCAacaggggcGCguagGCGCGGCGc -3'
miRNA:   3'- -CGGGGGUA---------------CGCGCGGU--------CG----UGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 48465 0.75 0.206477
Target:  5'- aCCCCCggGCgGCGCC-GC-CGCGGCGg -3'
miRNA:   3'- cGGGGGuaCG-CGCGGuCGuGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 77567 0.75 0.221618
Target:  5'- cGCCCCCgAUGCGCguGCCcguuugcgggAGCGCGCG-CGc -3'
miRNA:   3'- -CGGGGG-UACGCG--CGG----------UCGUGCGCuGC- -5'
5866 3' -62 NC_001806.1 + 4711 0.75 0.226872
Target:  5'- gGCCCCCccgagccGCGCGCCAccgucGCACGCGccCGg -3'
miRNA:   3'- -CGGGGGua-----CGCGCGGU-----CGUGCGCu-GC- -5'
5866 3' -62 NC_001806.1 + 127986 0.74 0.248947
Target:  5'- uGCCCgCCGUGCaguGCGCCGugcGCugGcCGGCGg -3'
miRNA:   3'- -CGGG-GGUACG---CGCGGU---CGugC-GCUGC- -5'
5866 3' -62 NC_001806.1 + 151949 0.73 0.266646
Target:  5'- cCCCCCAcGCcCGCCGcGCGCGCGcACGc -3'
miRNA:   3'- cGGGGGUaCGcGCGGU-CGUGCGC-UGC- -5'
5866 3' -62 NC_001806.1 + 239 0.73 0.266646
Target:  5'- cCCCCCAcGCcCGCCGcGCGCGCGcACGc -3'
miRNA:   3'- cGGGGGUaCGcGCGGU-CGUGCGC-UGC- -5'
5866 3' -62 NC_001806.1 + 39571 0.73 0.272768
Target:  5'- cCCCCCAgacGaCGCGCguGCGCGCGGa- -3'
miRNA:   3'- cGGGGGUa--C-GCGCGguCGUGCGCUgc -5'
5866 3' -62 NC_001806.1 + 103120 0.73 0.282797
Target:  5'- cGCCCCCGcgccucgcccgugGCGgacgaGCCAGCGgGCGAUGg -3'
miRNA:   3'- -CGGGGGUa------------CGCg----CGGUCGUgCGCUGC- -5'
5866 3' -62 NC_001806.1 + 4269 0.73 0.285349
Target:  5'- cGCCCCCc-GCgGCGCCgcGGCuCGCGACu -3'
miRNA:   3'- -CGGGGGuaCG-CGCGG--UCGuGCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.