miRNA display CGI


Results 21 - 40 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5866 3' -62 NC_001806.1 + 17477 0.66 0.642948
Target:  5'- gGCaCCCAggcGCGaCGUCGacGCGCGCGAUGc -3'
miRNA:   3'- -CGgGGGUa--CGC-GCGGU--CGUGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 37033 0.66 0.641967
Target:  5'- aCCCCCGgggacGCGcCGCCGGgggcguuUACGCGGgGg -3'
miRNA:   3'- cGGGGGUa----CGC-GCGGUC-------GUGCGCUgC- -5'
5866 3' -62 NC_001806.1 + 144471 0.66 0.641967
Target:  5'- cGCCCCCGgcuacaggggccaUGUuggGcCGCCA-CGCGCGGCu -3'
miRNA:   3'- -CGGGGGU-------------ACG---C-GCGGUcGUGCGCUGc -5'
5866 3' -62 NC_001806.1 + 130139 0.66 0.641967
Target:  5'- gGCCUCUGggGgGCGCCcgaGGCggaggagGCGCGACGc -3'
miRNA:   3'- -CGGGGGUa-CgCGCGG---UCG-------UGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 72259 0.66 0.640986
Target:  5'- cCCCCCAggguucccguagGCGgGCC-GCA-GCGGCGc -3'
miRNA:   3'- cGGGGGUa-----------CGCgCGGuCGUgCGCUGC- -5'
5866 3' -62 NC_001806.1 + 117161 0.66 0.640986
Target:  5'- aCCCCCGggguuauaaaagGCGCGUCccguGgACGCGGCc -3'
miRNA:   3'- cGGGGGUa-----------CGCGCGGu---CgUGCGCUGc -5'
5866 3' -62 NC_001806.1 + 146189 0.66 0.633138
Target:  5'- gGCCCCgGggGCGgGCCcgggcGGCGgGgGGCGg -3'
miRNA:   3'- -CGGGGgUa-CGCgCGG-----UCGUgCgCUGC- -5'
5866 3' -62 NC_001806.1 + 132082 0.66 0.633138
Target:  5'- cGCCCCCG---GgGCCGGCGCGgagucgggcaCGGCGc -3'
miRNA:   3'- -CGGGGGUacgCgCGGUCGUGC----------GCUGC- -5'
5866 3' -62 NC_001806.1 + 45367 0.66 0.633138
Target:  5'- cGCCCCCcucucuucUG-GCGCCuaacggGGCugcuCGCGACGu -3'
miRNA:   3'- -CGGGGGu-------ACgCGCGG------UCGu---GCGCUGC- -5'
5866 3' -62 NC_001806.1 + 121877 0.66 0.633138
Target:  5'- uGCCgggCgCGUGCGaCGgUGGCGCGCGGCu -3'
miRNA:   3'- -CGG---GgGUACGC-GCgGUCGUGCGCUGc -5'
5866 3' -62 NC_001806.1 + 106087 0.66 0.623326
Target:  5'- cGCCCCCcgG-GCcccccgaacCCAGCGgGUGGCGa -3'
miRNA:   3'- -CGGGGGuaCgCGc--------GGUCGUgCGCUGC- -5'
5866 3' -62 NC_001806.1 + 78691 0.66 0.623326
Target:  5'- gGCCgCCCAucUGCcccuCGuCCAGCACGUgcugGACGa -3'
miRNA:   3'- -CGG-GGGU--ACGc---GC-GGUCGUGCG----CUGC- -5'
5866 3' -62 NC_001806.1 + 74721 0.66 0.623326
Target:  5'- gGCCCCUGgugcUGCGCGaggccaCCAGUACGCugGAuCGg -3'
miRNA:   3'- -CGGGGGU----ACGCGC------GGUCGUGCG--CU-GC- -5'
5866 3' -62 NC_001806.1 + 51466 0.66 0.623326
Target:  5'- cGCCCCUc-GCGagaCGCCGGCGacagGUGGCGa -3'
miRNA:   3'- -CGGGGGuaCGC---GCGGUCGUg---CGCUGC- -5'
5866 3' -62 NC_001806.1 + 47360 0.66 0.623326
Target:  5'- cCCCCCAgGcCGUGCUGGCGuuCGUGGCc -3'
miRNA:   3'- cGGGGGUaC-GCGCGGUCGU--GCGCUGc -5'
5866 3' -62 NC_001806.1 + 45911 0.66 0.623326
Target:  5'- cGCCCCCccGaC-CGCCGGUugGggccCGGCGg -3'
miRNA:   3'- -CGGGGGuaC-GcGCGGUCGugC----GCUGC- -5'
5866 3' -62 NC_001806.1 + 35734 0.66 0.623326
Target:  5'- cGCCCCUG-GCGCGCgaaaucguggcgCGGCuCGUGGCc -3'
miRNA:   3'- -CGGGGGUaCGCGCG------------GUCGuGCGCUGc -5'
5866 3' -62 NC_001806.1 + 33154 0.66 0.623326
Target:  5'- cCCCCCAacaCGCGCuacgcggccgaCAGCACGCG-Ca -3'
miRNA:   3'- cGGGGGUac-GCGCG-----------GUCGUGCGCuGc -5'
5866 3' -62 NC_001806.1 + 20046 0.66 0.623326
Target:  5'- cCCCCCAgUGCGCGUCcGCcgcuuCGCuGACc -3'
miRNA:   3'- cGGGGGU-ACGCGCGGuCGu----GCG-CUGc -5'
5866 3' -62 NC_001806.1 + 127646 0.66 0.623326
Target:  5'- cGCCgCCUgcGCGCGCUggggccugGGCGCGCcGCu -3'
miRNA:   3'- -CGG-GGGuaCGCGCGG--------UCGUGCGcUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.