miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5866 3' -62 NC_001806.1 + 198 0.7 0.444683
Target:  5'- cGCCCgCCuuuuuUGCGCGC--GCGCGCGcccGCGg -3'
miRNA:   3'- -CGGG-GGu----ACGCGCGguCGUGCGC---UGC- -5'
5866 3' -62 NC_001806.1 + 239 0.73 0.266646
Target:  5'- cCCCCCAcGCcCGCCGcGCGCGCGcACGc -3'
miRNA:   3'- cGGGGGUaCGcGCGGU-CGUGCGC-UGC- -5'
5866 3' -62 NC_001806.1 + 1131 0.66 0.623326
Target:  5'- cGCCCCCuccccgcccGCGCGUC-GCAgGCGcagGCGc -3'
miRNA:   3'- -CGGGGGua-------CGCGCGGuCGUgCGC---UGC- -5'
5866 3' -62 NC_001806.1 + 1278 0.72 0.340232
Target:  5'- gGCCCacgagCCGcgGCGCGCCAgGCGgGCGGCc -3'
miRNA:   3'- -CGGG-----GGUa-CGCGCGGU-CGUgCGCUGc -5'
5866 3' -62 NC_001806.1 + 4119 0.67 0.613522
Target:  5'- cGCCCCgcccgucaCGggggGCGCGgCGGCGCcucuGCGugGg -3'
miRNA:   3'- -CGGGG--------GUa---CGCGCgGUCGUG----CGCugC- -5'
5866 3' -62 NC_001806.1 + 4269 0.73 0.285349
Target:  5'- cGCCCCCc-GCgGCGCCgcGGCuCGCGACu -3'
miRNA:   3'- -CGGGGGuaCG-CGCGG--UCGuGCGCUGc -5'
5866 3' -62 NC_001806.1 + 4556 0.68 0.536066
Target:  5'- gGCCCCgGagGCgGCGCUcGCACGC-ACGg -3'
miRNA:   3'- -CGGGGgUa-CG-CGCGGuCGUGCGcUGC- -5'
5866 3' -62 NC_001806.1 + 4711 0.75 0.226872
Target:  5'- gGCCCCCccgagccGCGCGCCAccgucGCACGCGccCGg -3'
miRNA:   3'- -CGGGGGua-----CGCGCGGU-----CGUGCGCu-GC- -5'
5866 3' -62 NC_001806.1 + 4889 0.67 0.613522
Target:  5'- gGCCCCUgccgGCGCGaggggGGgACGCGugGa -3'
miRNA:   3'- -CGGGGGua--CGCGCgg---UCgUGCGCugC- -5'
5866 3' -62 NC_001806.1 + 7303 0.7 0.444683
Target:  5'- gGCCCCCGUG-GCGgcCCGGCcCGgGGCc -3'
miRNA:   3'- -CGGGGGUACgCGC--GGUCGuGCgCUGc -5'
5866 3' -62 NC_001806.1 + 7417 0.78 0.136675
Target:  5'- gGgCCCCGUccggacccGCuCGCCGGCACGCGACGc -3'
miRNA:   3'- -CgGGGGUA--------CGcGCGGUCGUGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 7921 0.69 0.462295
Target:  5'- gGCCCCCcgcccCGCGCCgguccauuaagGGCGCGCGugcccGCGa -3'
miRNA:   3'- -CGGGGGuac--GCGCGG-----------UCGUGCGC-----UGC- -5'
5866 3' -62 NC_001806.1 + 8865 0.76 0.183231
Target:  5'- cGCUCCCcgGCG-GCCGGguCGCGGCu -3'
miRNA:   3'- -CGGGGGuaCGCgCGGUCguGCGCUGc -5'
5866 3' -62 NC_001806.1 + 11549 0.72 0.325825
Target:  5'- cGCCCCCGUcUGUGgUGGCGCGgGGCGu -3'
miRNA:   3'- -CGGGGGUAcGCGCgGUCGUGCgCUGC- -5'
5866 3' -62 NC_001806.1 + 12144 0.72 0.311875
Target:  5'- cGCCCCCAgagGaGaCGCCAG-GCGCGGCa -3'
miRNA:   3'- -CGGGGGUa--CgC-GCGGUCgUGCGCUGc -5'
5866 3' -62 NC_001806.1 + 13060 0.67 0.574495
Target:  5'- uGCCUuuGcggacgagcUGCGgaGgCGGCACGCGACGg -3'
miRNA:   3'- -CGGGggU---------ACGCg-CgGUCGUGCGCUGC- -5'
5866 3' -62 NC_001806.1 + 15877 0.66 0.623326
Target:  5'- gGCCUCCGcgaccGUG-GCCAGCugGCGGg- -3'
miRNA:   3'- -CGGGGGUa----CGCgCGGUCGugCGCUgc -5'
5866 3' -62 NC_001806.1 + 16647 0.78 0.133329
Target:  5'- gGCCCCCGcuguUGCGCGCCGGagcuCGCGGuCGc -3'
miRNA:   3'- -CGGGGGU----ACGCGCGGUCgu--GCGCU-GC- -5'
5866 3' -62 NC_001806.1 + 17257 0.7 0.418988
Target:  5'- uGCCCCCGcccugguccgGCGCGCCucGCGCaguucuuccggGCGACc -3'
miRNA:   3'- -CGGGGGUa---------CGCGCGGu-CGUG-----------CGCUGc -5'
5866 3' -62 NC_001806.1 + 17477 0.66 0.642948
Target:  5'- gGCaCCCAggcGCGaCGUCGacGCGCGCGAUGc -3'
miRNA:   3'- -CGgGGGUa--CGC-GCGGU--CGUGCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.