miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5866 5' -56.3 NC_001806.1 + 113764 0.66 0.911256
Target:  5'- -cUGUCG-GCUGccgUCGGGGCUGGgGu -3'
miRNA:   3'- gaGCAGCgUGACa--AGCCCCGACUgCu -5'
5866 5' -56.3 NC_001806.1 + 142435 0.66 0.911256
Target:  5'- -gCGcCGCGCUGUgggaGGGGCUGu--- -3'
miRNA:   3'- gaGCaGCGUGACAag--CCCCGACugcu -5'
5866 5' -56.3 NC_001806.1 + 147462 0.66 0.905214
Target:  5'- aUCGUCGUcggcucgaaagGCggggGUcCGGGGC-GGCGAg -3'
miRNA:   3'- gAGCAGCG-----------UGa---CAaGCCCCGaCUGCU- -5'
5866 5' -56.3 NC_001806.1 + 61115 0.66 0.905214
Target:  5'- -gCGUgGcCGCUGUUCGaGGGCcagGACa- -3'
miRNA:   3'- gaGCAgC-GUGACAAGC-CCCGa--CUGcu -5'
5866 5' -56.3 NC_001806.1 + 35823 0.66 0.885719
Target:  5'- cCUCGUCcCGCccgUGUUCGaGGGCcaagcGACGGa -3'
miRNA:   3'- -GAGCAGcGUG---ACAAGC-CCCGa----CUGCU- -5'
5866 5' -56.3 NC_001806.1 + 63148 0.67 0.864244
Target:  5'- cCUCGUCcaGCACccg-CGGGGC-GAUGAa -3'
miRNA:   3'- -GAGCAG--CGUGacaaGCCCCGaCUGCU- -5'
5866 5' -56.3 NC_001806.1 + 148733 0.67 0.848893
Target:  5'- gUCGUCGCcCcccgCGGGGgaGGCGGg -3'
miRNA:   3'- gAGCAGCGuGacaaGCCCCgaCUGCU- -5'
5866 5' -56.3 NC_001806.1 + 13142 0.68 0.81593
Target:  5'- gCUCGcCGCGCgg---GGGGCUGAUGu -3'
miRNA:   3'- -GAGCaGCGUGacaagCCCCGACUGCu -5'
5866 5' -56.3 NC_001806.1 + 55854 0.68 0.81593
Target:  5'- uUCGUCGUAUgggcgcucUUGGGGUUGACGc -3'
miRNA:   3'- gAGCAGCGUGaca-----AGCCCCGACUGCu -5'
5866 5' -56.3 NC_001806.1 + 109619 0.68 0.80726
Target:  5'- -gCGUCGCGuCcgGUgcgGGGGCUGGCGu -3'
miRNA:   3'- gaGCAGCGU-Ga-CAag-CCCCGACUGCu -5'
5866 5' -56.3 NC_001806.1 + 57171 0.69 0.761741
Target:  5'- uUCGaUCGCGC-GUUCGGGaGCcaccUGGCGGc -3'
miRNA:   3'- gAGC-AGCGUGaCAAGCCC-CG----ACUGCU- -5'
5866 5' -56.3 NC_001806.1 + 37767 0.69 0.752263
Target:  5'- -cCGUCcacGCGCUGUUcgcCGGGGCcgaccacgUGGCGAa -3'
miRNA:   3'- gaGCAG---CGUGACAA---GCCCCG--------ACUGCU- -5'
5866 5' -56.3 NC_001806.1 + 141787 0.7 0.723243
Target:  5'- cCUCGUCGUaaucgGCUGgggUCGGGGgUGGgGu -3'
miRNA:   3'- -GAGCAGCG-----UGACa--AGCCCCgACUgCu -5'
5866 5' -56.3 NC_001806.1 + 147194 0.76 0.403794
Target:  5'- gCUCGUCGCGguCUGggcUCGGGGUgGGCGGc -3'
miRNA:   3'- -GAGCAGCGU--GACa--AGCCCCGaCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.