miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5867 3' -53.6 NC_001806.1 + 88486 0.68 0.90988
Target:  5'- cGGCUCCagguacaCGcACGCGCcGGUCGGAc-- -3'
miRNA:   3'- aCCGAGG-------GCuUGCGCG-CUAGCUUuac -5'
5867 3' -53.6 NC_001806.1 + 65809 0.69 0.897831
Target:  5'- gGGC-CCUGGAgGUGCGGUUGAu--- -3'
miRNA:   3'- aCCGaGGGCUUgCGCGCUAGCUuuac -5'
5867 3' -53.6 NC_001806.1 + 144534 0.69 0.891144
Target:  5'- gGGCcuucUUUCGAAC-CGUGGUCGAGGUGu -3'
miRNA:   3'- aCCG----AGGGCUUGcGCGCUAGCUUUAC- -5'
5867 3' -53.6 NC_001806.1 + 60478 0.69 0.891144
Target:  5'- cGGC-CCUGaAGCGCGCGGaCGGAu-- -3'
miRNA:   3'- aCCGaGGGC-UUGCGCGCUaGCUUuac -5'
5867 3' -53.6 NC_001806.1 + 142245 0.69 0.889092
Target:  5'- gGGCUCcaugugagccucggCCGAACaGCGCGGUgGggGg- -3'
miRNA:   3'- aCCGAG--------------GGCUUG-CGCGCUAgCuuUac -5'
5867 3' -53.6 NC_001806.1 + 51382 0.69 0.881391
Target:  5'- aGGCgccgCCCGAucgcgcacagcgcgACGUgcgcgaacagcguGCGAUCGggGUGc -3'
miRNA:   3'- aCCGa---GGGCU--------------UGCG-------------CGCUAGCuuUAC- -5'
5867 3' -53.6 NC_001806.1 + 90745 0.69 0.877074
Target:  5'- cUGGCggaacagCCCGuACaCGCGGUCGGGcgGg -3'
miRNA:   3'- -ACCGa------GGGCuUGcGCGCUAGCUUuaC- -5'
5867 3' -53.6 NC_001806.1 + 102965 0.69 0.862107
Target:  5'- aGGCccgcgagCCCGAcgacgGCGCGCG-UCGGAAg- -3'
miRNA:   3'- aCCGa------GGGCU-----UGCGCGCuAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 136537 0.7 0.854302
Target:  5'- gGGCgauuguUCCCGGcCGCGCGGgagcgguagcgCGAGGUGa -3'
miRNA:   3'- aCCG------AGGGCUuGCGCGCUa----------GCUUUAC- -5'
5867 3' -53.6 NC_001806.1 + 56871 0.7 0.854302
Target:  5'- gGaGCUCCCGGGgGCGgGggCGAGGa- -3'
miRNA:   3'- aC-CGAGGGCUUgCGCgCuaGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 51512 0.7 0.84629
Target:  5'- aGGUgcgCCCGGACaGCGCGAgcUCGGc--- -3'
miRNA:   3'- aCCGa--GGGCUUG-CGCGCU--AGCUuuac -5'
5867 3' -53.6 NC_001806.1 + 76019 0.7 0.84629
Target:  5'- gGGCcgaCgCGcGGCGCGCGAUCGGAAg- -3'
miRNA:   3'- aCCGa--GgGC-UUGCGCGCUAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 118879 0.71 0.812322
Target:  5'- cGGCaCCCGGACGCGCc--CGGAAa- -3'
miRNA:   3'- aCCGaGGGCUUGCGCGcuaGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 1227 0.71 0.803389
Target:  5'- gUGGCgcaCCCGGACGUGgGG-CGAGAa- -3'
miRNA:   3'- -ACCGa--GGGCUUGCGCgCUaGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 119139 0.71 0.775673
Target:  5'- cGGggCCCGGAcCGcCGCGGUCGggGg- -3'
miRNA:   3'- aCCgaGGGCUU-GC-GCGCUAGCuuUac -5'
5867 3' -53.6 NC_001806.1 + 76907 0.72 0.746773
Target:  5'- uUGGC-CCUGGACGCGCGggUGGc--- -3'
miRNA:   3'- -ACCGaGGGCUUGCGCGCuaGCUuuac -5'
5867 3' -53.6 NC_001806.1 + 73581 0.72 0.716943
Target:  5'- aGuGCUCCUGGGCGCGCccGUCGucGUGg -3'
miRNA:   3'- aC-CGAGGGCUUGCGCGc-UAGCuuUAC- -5'
5867 3' -53.6 NC_001806.1 + 149735 0.74 0.655528
Target:  5'- gGGCgggCCCGGcgcaccGCGCgGCGAUCGAGGc- -3'
miRNA:   3'- aCCGa--GGGCU------UGCG-CGCUAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 127568 0.74 0.634807
Target:  5'- cGGCccggCCCGGugGCGCGGgccgCGGAGg- -3'
miRNA:   3'- aCCGa---GGGCUugCGCGCUa---GCUUUac -5'
5867 3' -53.6 NC_001806.1 + 53667 0.74 0.614077
Target:  5'- gGGCgacCUgGGGCGCGCGGUCGGcaaGGUGg -3'
miRNA:   3'- aCCGa--GGgCUUGCGCGCUAGCU---UUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.