miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5867 5' -58.1 NC_001806.1 + 125627 0.79 0.204321
Target:  5'- cCCGCCCGAGcCGGCGCCAGaggCC-CGg -3'
miRNA:   3'- cGGCGGGCUU-GUCGCGGUCaa-GGuGC- -5'
5867 5' -58.1 NC_001806.1 + 150543 0.78 0.236019
Target:  5'- cGCCGCCCGGccgucCAGCGCCGGcagCACGg -3'
miRNA:   3'- -CGGCGGGCUu----GUCGCGGUCaagGUGC- -5'
5867 5' -58.1 NC_001806.1 + 94285 0.78 0.236019
Target:  5'- cCCGCCCGGGCAGCGCCaucgaGGUcuUCCGg- -3'
miRNA:   3'- cGGCGGGCUUGUCGCGG-----UCA--AGGUgc -5'
5867 5' -58.1 NC_001806.1 + 146120 0.77 0.265496
Target:  5'- -aCGCCCGcaGACGGCGCCGG--CCACGa -3'
miRNA:   3'- cgGCGGGC--UUGUCGCGGUCaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 54448 0.77 0.278097
Target:  5'- cGCCGCCCGGGgcCAGCGCCAacgcgUCCGUGg -3'
miRNA:   3'- -CGGCGGGCUU--GUCGCGGUca---AGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 99540 0.76 0.297886
Target:  5'- cGCCGCgCGGACGGCGCgGGgcccCCGCu -3'
miRNA:   3'- -CGGCGgGCUUGUCGCGgUCaa--GGUGc -5'
5867 5' -58.1 NC_001806.1 + 71980 0.76 0.30472
Target:  5'- cGCCGCCCcacuacACGGCaGCCGGUggCCACGc -3'
miRNA:   3'- -CGGCGGGcu----UGUCG-CGGUCAa-GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 1122 0.75 0.338447
Target:  5'- cCCGCCCGcGCGucgcaggcgcaggcGCGCCAGgugcUCCGCGg -3'
miRNA:   3'- cGGCGGGCuUGU--------------CGCGGUCa---AGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 39122 0.75 0.355914
Target:  5'- -aCGCCUGGggGCAGCGCCuGgcCCACGg -3'
miRNA:   3'- cgGCGGGCU--UGUCGCGGuCaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 51508 0.75 0.363704
Target:  5'- -gCGCCCGGACAGCGCgAGcUCgGCc -3'
miRNA:   3'- cgGCGGGCUUGUCGCGgUCaAGgUGc -5'
5867 5' -58.1 NC_001806.1 + 150183 0.75 0.374806
Target:  5'- aGCCGCCggucgccggcgcuggCGAGCAGCcCCAGaaacUCCACGg -3'
miRNA:   3'- -CGGCGG---------------GCUUGUCGcGGUCa---AGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 125844 0.74 0.378826
Target:  5'- gGCCGCCCGGGCccacgGGCGCCgucccaaccgcacAGUcccagguaaccUCCACGc -3'
miRNA:   3'- -CGGCGGGCUUG-----UCGCGG-------------UCA-----------AGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 63292 0.74 0.379634
Target:  5'- cGCCGCCCcacaGGCGCgAGcgCCGCGg -3'
miRNA:   3'- -CGGCGGGcuugUCGCGgUCaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 5223 0.74 0.387773
Target:  5'- gGCCGCCCGcgggGACGGCcCCGGaagucUCCGCGu -3'
miRNA:   3'- -CGGCGGGC----UUGUCGcGGUCa----AGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 127646 0.74 0.396025
Target:  5'- cGCCGCCUGcGC-GCGCUGGggCCugGg -3'
miRNA:   3'- -CGGCGGGCuUGuCGCGGUCaaGGugC- -5'
5867 5' -58.1 NC_001806.1 + 129633 0.74 0.40439
Target:  5'- cGCCGCaCCGGGCgAGCGCgCGGUgcCCGCc -3'
miRNA:   3'- -CGGCG-GGCUUG-UCGCG-GUCAa-GGUGc -5'
5867 5' -58.1 NC_001806.1 + 130363 0.74 0.421449
Target:  5'- gGCCGCaUCGAGCGcCGCCGGgcCCGCGc -3'
miRNA:   3'- -CGGCG-GGCUUGUcGCGGUCaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 51379 0.73 0.438935
Target:  5'- cGCCGCCCGAucgcgcACAGCGCgAcgUgCGCGa -3'
miRNA:   3'- -CGGCGGGCU------UGUCGCGgUcaAgGUGC- -5'
5867 5' -58.1 NC_001806.1 + 34308 0.73 0.447833
Target:  5'- aCCGCCCGAcgACAGCgacGCCGG-UCC-CGg -3'
miRNA:   3'- cGGCGGGCU--UGUCG---CGGUCaAGGuGC- -5'
5867 5' -58.1 NC_001806.1 + 21599 0.73 0.456829
Target:  5'- gGCCaCCCGcAGCAGCGCCAuauUUCgGCGg -3'
miRNA:   3'- -CGGcGGGC-UUGUCGCGGUc--AAGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.