miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5867 5' -58.1 NC_001806.1 + 149752 0.66 0.821147
Target:  5'- cGCgGCCUGGGCGGCGggggcgggcCCGGcgcaCCGCGc -3'
miRNA:   3'- -CGgCGGGCUUGUCGC---------GGUCaa--GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 144708 0.66 0.821147
Target:  5'- -aCGCUCGGGCccGCGUCGGgaUCCACa -3'
miRNA:   3'- cgGCGGGCUUGu-CGCGGUCa-AGGUGc -5'
5867 5' -58.1 NC_001806.1 + 130412 0.66 0.821147
Target:  5'- gGCCGCgcccaagccCCGGGCGGCGgCgAGgacccCCGCGg -3'
miRNA:   3'- -CGGCG---------GGCUUGUCGC-GgUCaa---GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 128348 0.66 0.821147
Target:  5'- cGCCGCugCCGGGCgaggaccuggccGGCGgCGGggCCugGg -3'
miRNA:   3'- -CGGCG--GGCUUG------------UCGCgGUCaaGGugC- -5'
5867 5' -58.1 NC_001806.1 + 2673 0.66 0.821147
Target:  5'- cGCC-CCCGGucccuguauauAUAGUGUCacggGGUUCCACGc -3'
miRNA:   3'- -CGGcGGGCU-----------UGUCGCGG----UCAAGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 66532 0.66 0.812666
Target:  5'- aCCGcCCCGAACccuGCGguCCGGagCCGCGc -3'
miRNA:   3'- cGGC-GGGCUUGu--CGC--GGUCaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 102895 0.66 0.812666
Target:  5'- cGCCccggGCCCGAuGCGGCccguaGCCAGUcggUgCGCGg -3'
miRNA:   3'- -CGG----CGGGCU-UGUCG-----CGGUCA---AgGUGC- -5'
5867 5' -58.1 NC_001806.1 + 81787 0.66 0.812666
Target:  5'- cGCCGCCUGuauGCGGUGgUCGGggaCACGc -3'
miRNA:   3'- -CGGCGGGCu--UGUCGC-GGUCaagGUGC- -5'
5867 5' -58.1 NC_001806.1 + 147775 0.66 0.812666
Target:  5'- cCCGCCCGAcgGCccGCGCCucgcgugcguGGUcggCCGCGu -3'
miRNA:   3'- cGGCGGGCU--UGu-CGCGG----------UCAa--GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 142689 0.66 0.812666
Target:  5'- cGCUGUCCGAGCu---CCAG-UCCGCGu -3'
miRNA:   3'- -CGGCGGGCUUGucgcGGUCaAGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 20381 0.67 0.804029
Target:  5'- gGCCGCCCGcgccgcGACGaCGCCGG--CCGCc -3'
miRNA:   3'- -CGGCGGGC------UUGUcGCGGUCaaGGUGc -5'
5867 5' -58.1 NC_001806.1 + 49137 0.67 0.804029
Target:  5'- gGCCGCCUGcauGGCGGCGuucuCCAGggCaGCGg -3'
miRNA:   3'- -CGGCGGGC---UUGUCGC----GGUCaaGgUGC- -5'
5867 5' -58.1 NC_001806.1 + 121959 0.67 0.803156
Target:  5'- gGCCGCCCGccccgcgGACGcGCGCCGuGUgccCCAg- -3'
miRNA:   3'- -CGGCGGGC-------UUGU-CGCGGU-CAa--GGUgc -5'
5867 5' -58.1 NC_001806.1 + 22672 0.67 0.795241
Target:  5'- cGCCauGCCCGggUuuucggcGCGCCGGUgccuguuucucCCGCGu -3'
miRNA:   3'- -CGG--CGGGCuuGu------CGCGGUCAa----------GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 85438 0.67 0.795241
Target:  5'- gGCCgGCCCGggUggccgguguGCGCCGccUCCugGg -3'
miRNA:   3'- -CGG-CGGGCuuGu--------CGCGGUcaAGGugC- -5'
5867 5' -58.1 NC_001806.1 + 100654 0.67 0.795241
Target:  5'- aGCUGCCCG-GCG--GCCAGUugagCCGCGc -3'
miRNA:   3'- -CGGCGGGCuUGUcgCGGUCAa---GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 129579 0.67 0.795241
Target:  5'- cGCCGCCCugGGGCGGCuGUCcg--CCGCGc -3'
miRNA:   3'- -CGGCGGG--CUUGUCG-CGGucaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 130460 0.67 0.795241
Target:  5'- aGCC-CCCGGGCGGaCGCCGcccCCGCc -3'
miRNA:   3'- -CGGcGGGCUUGUC-GCGGUcaaGGUGc -5'
5867 5' -58.1 NC_001806.1 + 4116 0.67 0.794354
Target:  5'- cCCGCCCGucacggggggcgcGGCGGCGCC---UCUGCGu -3'
miRNA:   3'- cGGCGGGC-------------UUGUCGCGGucaAGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 38385 0.67 0.786312
Target:  5'- aCUGCCgGGuUAGCGCgGGgggCCACGa -3'
miRNA:   3'- cGGCGGgCUuGUCGCGgUCaa-GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.