Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5868 | 3' | -57.6 | NC_001806.1 | + | 1159 | 0.68 | 0.749576 |
Target: 5'- gGGUCGCgGGGgUCgCGGGGGGcucCGGc- -3' miRNA: 3'- -CCAGCGaUUCgAG-GCCCCCCu--GCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 3885 | 0.73 | 0.458604 |
Target: 5'- cGUCGUcauccucguccguggUGGGCUCCGGGuGGGugGGc- -3' miRNA: 3'- cCAGCG---------------AUUCGAGGCCC-CCCugCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 4078 | 0.68 | 0.720563 |
Target: 5'- gGGgggCGCgGGGCgUCCGgcGGGGGGCGGg- -3' miRNA: 3'- -CCa--GCGaUUCG-AGGC--CCCCCUGCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 4776 | 0.66 | 0.830232 |
Target: 5'- aGGggaGCgGGGCggcgCCGGaGGGGGCGGc- -3' miRNA: 3'- -CCag-CGaUUCGa---GGCC-CCCCUGCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 28174 | 0.67 | 0.795797 |
Target: 5'- cGGg-GCccgAAGCUUCGGGGGGucugggggauACGGUGa -3' miRNA: 3'- -CCagCGa--UUCGAGGCCCCCC----------UGCUAU- -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 31960 | 0.66 | 0.854239 |
Target: 5'- uGGcCGUccuGGCacacCUGGGGGGACGGg- -3' miRNA: 3'- -CCaGCGau-UCGa---GGCCCCCCUGCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 38987 | 0.67 | 0.795797 |
Target: 5'- gGGUgGCcgacgugGAGCUgCCGGGGGGG-GAc- -3' miRNA: 3'- -CCAgCGa------UUCGA-GGCCCCCCUgCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 41558 | 0.68 | 0.759057 |
Target: 5'- uGGUCGacgAGGCcgccuUCgGGGGGGAgGAg- -3' miRNA: 3'- -CCAGCga-UUCG-----AGgCCCCCCUgCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 52480 | 0.66 | 0.854239 |
Target: 5'- gGGUCGUUGuuGGUUCCGGucccccaccuGaGGGCGAUAg -3' miRNA: 3'- -CCAGCGAU--UCGAGGCC----------CcCCUGCUAU- -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 56838 | 0.66 | 0.83842 |
Target: 5'- cGUCGCcgcGGGC-CCGGGGGGcAgGGg- -3' miRNA: 3'- cCAGCGa--UUCGaGGCCCCCC-UgCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 56877 | 0.69 | 0.670844 |
Target: 5'- gGGUUGg-GAGCUCCcgggGGcGGGGGCGAg- -3' miRNA: 3'- -CCAGCgaUUCGAGG----CC-CCCCUGCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 59006 | 0.69 | 0.679881 |
Target: 5'- -cUCGCUGugcgagcAGCUCCGGGGcauuaucuccgaGGGCGGg- -3' miRNA: 3'- ccAGCGAU-------UCGAGGCCCC------------CCUGCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 59957 | 0.72 | 0.492087 |
Target: 5'- cGGUCGC---GCUCuCGGaGGGGGCGGc- -3' miRNA: 3'- -CCAGCGauuCGAG-GCC-CCCCUGCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 63172 | 0.71 | 0.560103 |
Target: 5'- cGGcgCGCUu--CUCCGGGGGGGCa--- -3' miRNA: 3'- -CCa-GCGAuucGAGGCCCCCCUGcuau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 66248 | 0.67 | 0.816768 |
Target: 5'- cGGgggCGCUuggccggggagggcaGGGCcgCgGGGGGGGCGGg- -3' miRNA: 3'- -CCa--GCGA---------------UUCGa-GgCCCCCCUGCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 73733 | 0.73 | 0.454959 |
Target: 5'- --aCGCUGAGCcccUCGGGGGGGCGcgAg -3' miRNA: 3'- ccaGCGAUUCGa--GGCCCCCCUGCuaU- -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 74333 | 0.68 | 0.73032 |
Target: 5'- uGUCGCUGGGC-CCagcuggaauGGGGGGGUGAc- -3' miRNA: 3'- cCAGCGAUUCGaGG---------CCCCCCUGCUau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 75311 | 0.7 | 0.640574 |
Target: 5'- gGGUCGCUucggccgcGUUCgCGGGGGGGCc--- -3' miRNA: 3'- -CCAGCGAuu------CGAG-GCCCCCCUGcuau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 81194 | 0.7 | 0.640574 |
Target: 5'- cGUCGCgaccuagGGGC-CUGGGGGGACu--- -3' miRNA: 3'- cCAGCGa------UUCGaGGCCCCCCUGcuau -5' |
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5868 | 3' | -57.6 | NC_001806.1 | + | 84270 | 0.66 | 0.854239 |
Target: 5'- gGGUC-CUgGAGggCCGcGGGGGAuCGAUAa -3' miRNA: 3'- -CCAGcGA-UUCgaGGC-CCCCCU-GCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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