miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5868 3' -57.6 NC_001806.1 + 147191 0.68 0.749576
Target:  5'- cGUCGCggucUGGGCU-CGGGGuGGGCGGc- -3'
miRNA:   3'- cCAGCG----AUUCGAgGCCCC-CCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 74333 0.68 0.73032
Target:  5'- uGUCGCUGGGC-CCagcuggaauGGGGGGGUGAc- -3'
miRNA:   3'- cCAGCGAUUCGaGG---------CCCCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 4078 0.68 0.720563
Target:  5'- gGGgggCGCgGGGCgUCCGgcGGGGGGCGGg- -3'
miRNA:   3'- -CCa--GCGaUUCG-AGGC--CCCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 131547 0.68 0.720563
Target:  5'- ---gGgUGGGCccgCCGGGGGGGCGGg- -3'
miRNA:   3'- ccagCgAUUCGa--GGCCCCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 59006 0.69 0.679881
Target:  5'- -cUCGCUGugcgagcAGCUCCGGGGcauuaucuccgaGGGCGGg- -3'
miRNA:   3'- ccAGCGAU-------UCGAGGCCCC------------CCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 56877 0.69 0.670844
Target:  5'- gGGUUGg-GAGCUCCcgggGGcGGGGGCGAg- -3'
miRNA:   3'- -CCAGCgaUUCGAGG----CC-CCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 123149 0.69 0.660773
Target:  5'- gGGcCGCaGGGCguggaUGGGGGGGCGGUc -3'
miRNA:   3'- -CCaGCGaUUCGag---GCCCCCCUGCUAu -5'
5868 3' -57.6 NC_001806.1 + 87468 0.7 0.650681
Target:  5'- cGGgCG-UGAGUUCCaGGGGGACGGg- -3'
miRNA:   3'- -CCaGCgAUUCGAGGcCCCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 81194 0.7 0.640574
Target:  5'- cGUCGCgaccuagGGGC-CUGGGGGGACu--- -3'
miRNA:   3'- cCAGCGa------UUCGaGGCCCCCCUGcuau -5'
5868 3' -57.6 NC_001806.1 + 75311 0.7 0.640574
Target:  5'- gGGUCGCUucggccgcGUUCgCGGGGGGGCc--- -3'
miRNA:   3'- -CCAGCGAuu------CGAG-GCCCCCCUGcuau -5'
5868 3' -57.6 NC_001806.1 + 95593 0.71 0.580057
Target:  5'- gGGaUCGUUGggGGgUCgGGGGGGACGGg- -3'
miRNA:   3'- -CC-AGCGAU--UCgAGgCCCCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 63172 0.71 0.560103
Target:  5'- cGGcgCGCUu--CUCCGGGGGGGCa--- -3'
miRNA:   3'- -CCa-GCGAuucGAGGCCCCCCUGcuau -5'
5868 3' -57.6 NC_001806.1 + 121861 0.71 0.560103
Target:  5'- cGGUggCGCgcGGCUCgGGGGGGcCGGg- -3'
miRNA:   3'- -CCA--GCGauUCGAGgCCCCCCuGCUau -5'
5868 3' -57.6 NC_001806.1 + 59957 0.72 0.492087
Target:  5'- cGGUCGC---GCUCuCGGaGGGGGCGGc- -3'
miRNA:   3'- -CCAGCGauuCGAG-GCC-CCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 3885 0.73 0.458604
Target:  5'- cGUCGUcauccucguccguggUGGGCUCCGGGuGGGugGGc- -3'
miRNA:   3'- cCAGCG---------------AUUCGAGGCCC-CCCugCUau -5'
5868 3' -57.6 NC_001806.1 + 73733 0.73 0.454959
Target:  5'- --aCGCUGAGCcccUCGGGGGGGCGcgAg -3'
miRNA:   3'- ccaGCGAUUCGa--GGCCCCCCUGCuaU- -5'
5868 3' -57.6 NC_001806.1 + 141895 0.74 0.402261
Target:  5'- cGGgggCGCUGGGCcaagaccUCGGGGGGGCGGg- -3'
miRNA:   3'- -CCa--GCGAUUCGa------GGCCCCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 141574 0.75 0.34591
Target:  5'- cGGUCGCagauGGggCCGGGGGGGCGu-- -3'
miRNA:   3'- -CCAGCGau--UCgaGGCCCCCCUGCuau -5'
5868 3' -57.6 NC_001806.1 + 95550 0.77 0.282121
Target:  5'- gGGUCGCUcuGGGUccUCCGGGGGGcgGCGGg- -3'
miRNA:   3'- -CCAGCGA--UUCG--AGGCCCCCC--UGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.