miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5868 5' -57.7 NC_001806.1 + 8777 0.66 0.873201
Target:  5'- cCCC-CC-CCCCCGCCuu---CUCCUc -3'
miRNA:   3'- -GGGuGGcGGGGGUGGuauuuGAGGGc -5'
5868 5' -57.7 NC_001806.1 + 128854 0.66 0.865974
Target:  5'- gCCCG-CGCCCCCcuCCAc--GCcCCCGg -3'
miRNA:   3'- -GGGUgGCGGGGGu-GGUauuUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 148057 0.66 0.865974
Target:  5'- gCCACgGCuCCCCGCU---GACguaCCCGu -3'
miRNA:   3'- gGGUGgCG-GGGGUGGuauUUGa--GGGC- -5'
5868 5' -57.7 NC_001806.1 + 130191 0.66 0.865974
Target:  5'- gCCC-CCGCCCCCggggcggguGCUGUAcGGCggCCUGg -3'
miRNA:   3'- -GGGuGGCGGGGG---------UGGUAU-UUGa-GGGC- -5'
5868 5' -57.7 NC_001806.1 + 43660 0.66 0.865974
Target:  5'- aCCCACCGCUagCACCAggGAGgUCaCCc -3'
miRNA:   3'- -GGGUGGCGGggGUGGUa-UUUgAG-GGc -5'
5868 5' -57.7 NC_001806.1 + 26408 0.66 0.865974
Target:  5'- cCCgGCCGCCgCggaCGCCGUGGcGC-CCCGg -3'
miRNA:   3'- -GGgUGGCGG-Gg--GUGGUAUU-UGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 46644 0.66 0.865974
Target:  5'- cCCCACCGagaCCCCauugggACCAau-ACgCCCGc -3'
miRNA:   3'- -GGGUGGCg--GGGG------UGGUauuUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 147006 0.66 0.865241
Target:  5'- cCCCGaCGaCCCCCGCCGUcgacgcgGAACUagcgcggaCCGg -3'
miRNA:   3'- -GGGUgGC-GGGGGUGGUA-------UUUGAg-------GGC- -5'
5868 5' -57.7 NC_001806.1 + 30347 0.66 0.861541
Target:  5'- cCCCACCGUUgCCCggGCCGUugcccgggccuccucAAGCgaUCCCGa -3'
miRNA:   3'- -GGGUGGCGG-GGG--UGGUA---------------UUUG--AGGGC- -5'
5868 5' -57.7 NC_001806.1 + 34469 0.66 0.858546
Target:  5'- uCCCucgACCGCCaCCCggacGCCGcgAAACgcCCCGg -3'
miRNA:   3'- -GGG---UGGCGG-GGG----UGGUa-UUUGa-GGGC- -5'
5868 5' -57.7 NC_001806.1 + 117595 0.66 0.858546
Target:  5'- aCCACCaCCaCCACCGacacCUCCCGc -3'
miRNA:   3'- gGGUGGcGGgGGUGGUauuuGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 65174 0.66 0.858546
Target:  5'- gUCGCC-CCCCCACCucgauCUCCa- -3'
miRNA:   3'- gGGUGGcGGGGGUGGuauuuGAGGgc -5'
5868 5' -57.7 NC_001806.1 + 147634 0.66 0.858546
Target:  5'- aUgGCCGCCaCCgGCCGUGAcgacguCUCCgCGg -3'
miRNA:   3'- gGgUGGCGG-GGgUGGUAUUu-----GAGG-GC- -5'
5868 5' -57.7 NC_001806.1 + 144476 0.66 0.858546
Target:  5'- uCCC-CCGCCCCCggcuacagggGCCAUGuugGGCcgCCaCGc -3'
miRNA:   3'- -GGGuGGCGGGGG----------UGGUAU---UUGa-GG-GC- -5'
5868 5' -57.7 NC_001806.1 + 73171 0.66 0.858546
Target:  5'- cCUCGCCGCCagcgCCACCGacgaGGAC-CCCu -3'
miRNA:   3'- -GGGUGGCGGg---GGUGGUa---UUUGaGGGc -5'
5868 5' -57.7 NC_001806.1 + 69261 0.66 0.858546
Target:  5'- cCCCucCCGCCCa-GCCAUGgcAACUucgcccCCCGg -3'
miRNA:   3'- -GGGu-GGCGGGggUGGUAU--UUGA------GGGC- -5'
5868 5' -57.7 NC_001806.1 + 25772 0.66 0.858546
Target:  5'- gCCCggGCgCGUCCCCGgcCCGgaggAGGCUCUCGu -3'
miRNA:   3'- -GGG--UG-GCGGGGGU--GGUa---UUUGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 78258 0.66 0.858546
Target:  5'- cCCCGcagggggcuCCGCgCCCACCcccccUGGGC-CCCGa -3'
miRNA:   3'- -GGGU---------GGCGgGGGUGGu----AUUUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 130682 0.66 0.850922
Target:  5'- gUCGCCGCgCCCGCCGg-----CCCa -3'
miRNA:   3'- gGGUGGCGgGGGUGGUauuugaGGGc -5'
5868 5' -57.7 NC_001806.1 + 150538 0.66 0.850922
Target:  5'- cCCgGCCGUCCagCGCCGgcAGCacggCCCGg -3'
miRNA:   3'- -GGgUGGCGGGg-GUGGUauUUGa---GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.