miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5870 3' -68.6 NC_001806.1 + 77383 0.66 0.383673
Target:  5'- cCCUGcGGGCCUCCcuGCCGgCGGGCu -3'
miRNA:   3'- aGGGC-CCCGGGGGccCGGCgGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 1400 0.66 0.383673
Target:  5'- uUCgCCGGGccgGCUCCgCGGGCCagggcCCGGGCa -3'
miRNA:   3'- -AG-GGCCC---CGGGG-GCCCGGc----GGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 569 0.66 0.383673
Target:  5'- gCCgGGGGggCCCGGGCUGCCc---- -3'
miRNA:   3'- aGGgCCCCggGGGCCCGGCGGcuugc -5'
5870 3' -68.6 NC_001806.1 + 114343 0.66 0.383673
Target:  5'- gCCaugGGGGCgCCgGGGCCGuCCGucCa -3'
miRNA:   3'- aGGg--CCCCGgGGgCCCGGC-GGCuuGc -5'
5870 3' -68.6 NC_001806.1 + 64891 0.66 0.383673
Target:  5'- cUCCUcuGGCCgcuccucguccuCCCGGGCUgcgGCCGGACGc -3'
miRNA:   3'- -AGGGccCCGG------------GGGCCCGG---CGGCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 17206 0.66 0.383673
Target:  5'- aUCUGGaccGGCCCCgCGGGgacgCGCCGGGCc -3'
miRNA:   3'- aGGGCC---CCGGGG-GCCCg---GCGGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 73080 0.66 0.382917
Target:  5'- uUCCCGGGGCaUCCGGuguaccaGCgCGCCcccGACGa -3'
miRNA:   3'- -AGGGCCCCGgGGGCC-------CG-GCGGc--UUGC- -5'
5870 3' -68.6 NC_001806.1 + 87284 0.66 0.379152
Target:  5'- gUCCCGGGGCaaacaUCCaGGGgCGCggugucauugcuccaCGGGCGa -3'
miRNA:   3'- -AGGGCCCCGg----GGG-CCCgGCG---------------GCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 62932 0.66 0.376158
Target:  5'- cUCCgGGGGaCagCGGGCCGCCGccacCGg -3'
miRNA:   3'- -AGGgCCCCgGggGCCCGGCGGCuu--GC- -5'
5870 3' -68.6 NC_001806.1 + 127561 0.66 0.376158
Target:  5'- gCCCGGuGGCg--CGGGCCGCgGAGgGa -3'
miRNA:   3'- aGGGCC-CCGgggGCCCGGCGgCUUgC- -5'
5870 3' -68.6 NC_001806.1 + 72715 0.66 0.376158
Target:  5'- -gCCGGcGCCCgUGGGCCcCCGcGACGa -3'
miRNA:   3'- agGGCCcCGGGgGCCCGGcGGC-UUGC- -5'
5870 3' -68.6 NC_001806.1 + 18749 0.66 0.368742
Target:  5'- gCCCGGGGCCUUauGGaggaCGCCu-GCGa -3'
miRNA:   3'- aGGGCCCCGGGGgcCCg---GCGGcuUGC- -5'
5870 3' -68.6 NC_001806.1 + 79699 0.66 0.368742
Target:  5'- gCCCGGGGCCacaCCCGcccacaGCCGCCc---- -3'
miRNA:   3'- aGGGCCCCGG---GGGCc-----CGGCGGcuugc -5'
5870 3' -68.6 NC_001806.1 + 58355 0.66 0.368742
Target:  5'- cCCCgaagagGGGGaCCCCgGGGCUcaGCCaGACGc -3'
miRNA:   3'- aGGG------CCCC-GGGGgCCCGG--CGGcUUGC- -5'
5870 3' -68.6 NC_001806.1 + 8286 0.66 0.368742
Target:  5'- cCCCGGcGaCCCCCGGcCCGCaCGAuccCGa -3'
miRNA:   3'- aGGGCCcC-GGGGGCCcGGCG-GCUu--GC- -5'
5870 3' -68.6 NC_001806.1 + 31373 0.66 0.368742
Target:  5'- cCCCGGGGaccuugCCCC-GGCCGgauucCCGGGCc -3'
miRNA:   3'- aGGGCCCCg-----GGGGcCCGGC-----GGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 32919 0.66 0.367271
Target:  5'- cCCCGGaggagcagcugacGGCCCCCGGcggcgacacgaccGCgGCCcaGGACGu -3'
miRNA:   3'- aGGGCC-------------CCGGGGGCC-------------CGgCGG--CUUGC- -5'
5870 3' -68.6 NC_001806.1 + 144848 0.67 0.361428
Target:  5'- cCCCGGGaGCcccggucuCCCCGGgaGCC-CCGGACc -3'
miRNA:   3'- aGGGCCC-CG--------GGGGCC--CGGcGGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 83678 0.67 0.361428
Target:  5'- aCCgCGGcGGCCCUgGGGCCGgUccGCGu -3'
miRNA:   3'- aGG-GCC-CCGGGGgCCCGGCgGcuUGC- -5'
5870 3' -68.6 NC_001806.1 + 140388 0.67 0.361428
Target:  5'- cUCgCCGGGGCCagacgCgGGGCCGaaG-ACGg -3'
miRNA:   3'- -AG-GGCCCCGGg----GgCCCGGCggCuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.