miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5870 5' -54.6 NC_001806.1 + 26546 0.66 0.933271
Target:  5'- -gCGUCCgCGCcccucuGGCCAucGGUCCCCu- -3'
miRNA:   3'- caGCAGGaGCG------UCGGUu-UUAGGGGuu -5'
5870 5' -54.6 NC_001806.1 + 30023 0.66 0.930131
Target:  5'- gGUCG-CCUUGCggaugugcgccguguAGCCGAucuuGAUCCCCc- -3'
miRNA:   3'- -CAGCaGGAGCG---------------UCGGUU----UUAGGGGuu -5'
5870 5' -54.6 NC_001806.1 + 81019 0.66 0.927987
Target:  5'- uUCGUCCguuaGcCGGaCCGGAGUCuCCCAGg -3'
miRNA:   3'- cAGCAGGag--C-GUC-GGUUUUAG-GGGUU- -5'
5870 5' -54.6 NC_001806.1 + 47856 0.66 0.927987
Target:  5'- -gCGUUCUCGCGGCCAuaacaaCCGAc -3'
miRNA:   3'- caGCAGGAGCGUCGGUuuuaggGGUU- -5'
5870 5' -54.6 NC_001806.1 + 17362 0.66 0.922451
Target:  5'- cUCGgccgCCUCGaccaGGCUGcgGUCCCCGg -3'
miRNA:   3'- cAGCa---GGAGCg---UCGGUuuUAGGGGUu -5'
5870 5' -54.6 NC_001806.1 + 87902 0.67 0.906883
Target:  5'- uUCGUgCUCGCgaagccuuuccgucaGGCCAAAAUCCagggCCAc -3'
miRNA:   3'- cAGCAgGAGCG---------------UCGGUUUUAGG----GGUu -5'
5870 5' -54.6 NC_001806.1 + 39373 0.67 0.904338
Target:  5'- --aGUCCcCGCccccGGCCAcccGGAUCCCCGc -3'
miRNA:   3'- cagCAGGaGCG----UCGGU---UUUAGGGGUu -5'
5870 5' -54.6 NC_001806.1 + 59682 0.68 0.861572
Target:  5'- ---uUCCaCGCGGCCAucuUCCCCAAc -3'
miRNA:   3'- cagcAGGaGCGUCGGUuuuAGGGGUU- -5'
5870 5' -54.6 NC_001806.1 + 105826 0.68 0.861572
Target:  5'- gGUCGggcgCCUgGCGGCCAugcAUgCCCGGa -3'
miRNA:   3'- -CAGCa---GGAgCGUCGGUuu-UAgGGGUU- -5'
5870 5' -54.6 NC_001806.1 + 149074 0.68 0.853648
Target:  5'- -aCGgcggCCUCGCuGCCGccggccacgcgcAGGUCCCCGc -3'
miRNA:   3'- caGCa---GGAGCGuCGGU------------UUUAGGGGUu -5'
5870 5' -54.6 NC_001806.1 + 82317 0.68 0.852844
Target:  5'- -aCGUCCUCGCcgacccgGGCUuc-GUCCCCu- -3'
miRNA:   3'- caGCAGGAGCG-------UCGGuuuUAGGGGuu -5'
5870 5' -54.6 NC_001806.1 + 98961 0.68 0.837173
Target:  5'- -cCGUCCUCGCccgccaucgAGCCAAcg-CCCUGAc -3'
miRNA:   3'- caGCAGGAGCG---------UCGGUUuuaGGGGUU- -5'
5870 5' -54.6 NC_001806.1 + 33524 0.69 0.819913
Target:  5'- --aGUgCCUgGCGGCCGcggGAAUCCCCu- -3'
miRNA:   3'- cagCA-GGAgCGUCGGU---UUUAGGGGuu -5'
5870 5' -54.6 NC_001806.1 + 87082 0.7 0.750373
Target:  5'- gGUCGUCCgagacgaacuccgCGgGGCCGAcugGAUCCCCc- -3'
miRNA:   3'- -CAGCAGGa------------GCgUCGGUU---UUAGGGGuu -5'
5870 5' -54.6 NC_001806.1 + 73175 0.7 0.724313
Target:  5'- -aCGUCCUCGCcGCCAGcg-CCaCCGAc -3'
miRNA:   3'- caGCAGGAGCGuCGGUUuuaGG-GGUU- -5'
5870 5' -54.6 NC_001806.1 + 25492 0.72 0.651826
Target:  5'- -aCGUgCUCGaCAGCCAcu-UCCCCGAc -3'
miRNA:   3'- caGCAgGAGC-GUCGGUuuuAGGGGUU- -5'
5870 5' -54.6 NC_001806.1 + 89893 0.73 0.557782
Target:  5'- uGUUGUCgUCGCcGCCAAAGaCCCCGc -3'
miRNA:   3'- -CAGCAGgAGCGuCGGUUUUaGGGGUu -5'
5870 5' -54.6 NC_001806.1 + 131197 0.77 0.377675
Target:  5'- -aCGUCCgccgUCGCAGCCGu-AUCCCCGGa -3'
miRNA:   3'- caGCAGG----AGCGUCGGUuuUAGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.