miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5874 3' -59.3 NC_001806.1 + 4260 0.66 0.80776
Target:  5'- -cGGCGCCGCGGCucgcGACuggCGGGAg-- -3'
miRNA:   3'- ccCCGCGGUGCCG----CUGca-GCCUUagc -5'
5874 3' -59.3 NC_001806.1 + 55532 0.66 0.799222
Target:  5'- cGGGCGCCACGGUGGUG-CaGu-UCGa -3'
miRNA:   3'- cCCCGCGGUGCCGCUGCaGcCuuAGC- -5'
5874 3' -59.3 NC_001806.1 + 56711 0.66 0.790544
Target:  5'- uGGGGCGCUGCGuccGCGagcaGCG-CGGGGagcUCGa -3'
miRNA:   3'- -CCCCGCGGUGC---CGC----UGCaGCCUU---AGC- -5'
5874 3' -59.3 NC_001806.1 + 84738 0.66 0.790544
Target:  5'- uGGGcCGUCGCGGCGAgaGaUCGGGGggCGc -3'
miRNA:   3'- cCCC-GCGGUGCCGCUg-C-AGCCUUa-GC- -5'
5874 3' -59.3 NC_001806.1 + 141894 0.66 0.790544
Target:  5'- gGGGGCG-CugGGCcaaGACcUCGGGGgggCGg -3'
miRNA:   3'- -CCCCGCgGugCCG---CUGcAGCCUUa--GC- -5'
5874 3' -59.3 NC_001806.1 + 148012 0.66 0.790544
Target:  5'- -aGGCGCCGgaGGUcGCGUCGGcGUCc -3'
miRNA:   3'- ccCCGCGGUg-CCGcUGCAGCCuUAGc -5'
5874 3' -59.3 NC_001806.1 + 37135 0.67 0.781735
Target:  5'- -aGGUGCCGCGGCG-CG-CaGGGAUgGa -3'
miRNA:   3'- ccCCGCGGUGCCGCuGCaG-CCUUAgC- -5'
5874 3' -59.3 NC_001806.1 + 147766 0.67 0.781735
Target:  5'- cGGcccGCGCCucGCGuGCGugGUCGGccgcGUCGu -3'
miRNA:   3'- -CCc--CGCGG--UGC-CGCugCAGCCu---UAGC- -5'
5874 3' -59.3 NC_001806.1 + 38891 0.67 0.781735
Target:  5'- -uGGCGCUAugucCGGCGGCGUucCGGGA-CGc -3'
miRNA:   3'- ccCCGCGGU----GCCGCUGCA--GCCUUaGC- -5'
5874 3' -59.3 NC_001806.1 + 126343 0.67 0.781735
Target:  5'- cGGGcggcgugcGCGCgCGCGGCGGgCGUgGGGG-CGg -3'
miRNA:   3'- -CCC--------CGCG-GUGCCGCU-GCAgCCUUaGC- -5'
5874 3' -59.3 NC_001806.1 + 120287 0.67 0.781735
Target:  5'- cGGGGCGCCcaaaaggggguCGGCcacaccacaGACGUgGGuGUUGg -3'
miRNA:   3'- -CCCCGCGGu----------GCCG---------CUGCAgCCuUAGC- -5'
5874 3' -59.3 NC_001806.1 + 10399 0.67 0.772802
Target:  5'- aGGGGcCGCCAC-GCGuCGUCG--AUCa -3'
miRNA:   3'- -CCCC-GCGGUGcCGCuGCAGCcuUAGc -5'
5874 3' -59.3 NC_001806.1 + 142913 0.67 0.772802
Target:  5'- uGGGGCGCCuuaccagaagACGGaCGAa-UCGGAGg-- -3'
miRNA:   3'- -CCCCGCGG----------UGCC-GCUgcAGCCUUagc -5'
5874 3' -59.3 NC_001806.1 + 149091 0.67 0.772802
Target:  5'- -cGGCGCgCACGGCGGCcacggCGGccUCGc -3'
miRNA:   3'- ccCCGCG-GUGCCGCUGca---GCCuuAGC- -5'
5874 3' -59.3 NC_001806.1 + 118276 0.67 0.761017
Target:  5'- gGGGGuCGCCggggcagggGCGGgGGCGUgGGcgggggugcucgucGAUCGa -3'
miRNA:   3'- -CCCC-GCGG---------UGCCgCUGCAgCC--------------UUAGC- -5'
5874 3' -59.3 NC_001806.1 + 130636 0.67 0.754596
Target:  5'- cGGuGGCgGCCAuCGGCGucaucgaccuCGUCGGAcUCc -3'
miRNA:   3'- -CC-CCG-CGGU-GCCGCu---------GCAGCCUuAGc -5'
5874 3' -59.3 NC_001806.1 + 66213 0.67 0.754596
Target:  5'- gGGGGCggGCUcguccccugggGCGGCGGCGUcuagcucgCGGAGggCGg -3'
miRNA:   3'- -CCCCG--CGG-----------UGCCGCUGCA--------GCCUUa-GC- -5'
5874 3' -59.3 NC_001806.1 + 48815 0.67 0.74534
Target:  5'- gGGGGCGCgAUGGCacagcggaccGGCGUCuGGcgUGg -3'
miRNA:   3'- -CCCCGCGgUGCCG----------CUGCAGcCUuaGC- -5'
5874 3' -59.3 NC_001806.1 + 140116 0.67 0.74534
Target:  5'- aGGGCgaauGCCACGGCGgggcgACGUgGGcAcgCGg -3'
miRNA:   3'- cCCCG----CGGUGCCGC-----UGCAgCC-UuaGC- -5'
5874 3' -59.3 NC_001806.1 + 149427 0.67 0.74534
Target:  5'- gGGGGCGUgGagGGgGGCG-CGGGcgCGg -3'
miRNA:   3'- -CCCCGCGgUg-CCgCUGCaGCCUuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.