Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5874 | 5' | -53 | NC_001806.1 | + | 131647 | 0.68 | 0.932429 |
Target: 5'- cGCgGAUGGgcgGgGCCGGggGUUCGAc -3' miRNA: 3'- -CGgCUGUCau-UgCGGUCuuCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 85391 | 0.68 | 0.9271 |
Target: 5'- -aCGGCGGUGACGCUcgcuAGCUCGu- -3' miRNA: 3'- cgGCUGUCAUUGCGGucu-UCGAGCua -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 75137 | 0.68 | 0.921518 |
Target: 5'- cGCCGAgCGGgccGGgGCCguggAGGAGCUCGGg -3' miRNA: 3'- -CGGCU-GUCa--UUgCGG----UCUUCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 125640 | 0.68 | 0.910221 |
Target: 5'- gGCCgGACAGccccccgcccgagccGGCGCCAGAGGCcCGGc -3' miRNA: 3'- -CGG-CUGUCa--------------UUGCGGUCUUCGaGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 32513 | 0.68 | 0.909602 |
Target: 5'- gGCCGGCGGcGACgGCCGGAcuGGCUgUGGa -3' miRNA: 3'- -CGGCUGUCaUUG-CGGUCU--UCGA-GCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 114755 | 0.68 | 0.909602 |
Target: 5'- uGCCGGCAaaaguGCGaUAGAGGCUCGGg -3' miRNA: 3'- -CGGCUGUcau--UGCgGUCUUCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 12319 | 0.68 | 0.909602 |
Target: 5'- gGCCggGACAGcaa--CCAGAAGCUCGAa -3' miRNA: 3'- -CGG--CUGUCauugcGGUCUUCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 33236 | 0.69 | 0.89669 |
Target: 5'- cGCCGugGCGGcgcuGCGCCuugcguGggGCUCGGg -3' miRNA: 3'- -CGGC--UGUCau--UGCGGu-----CuuCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 148188 | 0.69 | 0.87551 |
Target: 5'- gGCCGcCGG-GGCGCCcGAGGcCUCGAa -3' miRNA: 3'- -CGGCuGUCaUUGCGGuCUUC-GAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 6855 | 0.7 | 0.867984 |
Target: 5'- gGCCGGCuGgaagacCGCCAGggGgUCGGc -3' miRNA: 3'- -CGGCUGuCauu---GCGGUCuuCgAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 85012 | 0.7 | 0.867984 |
Target: 5'- gGUCGGCGGggugccgcAGCGCCAGAAGCagCGu- -3' miRNA: 3'- -CGGCUGUCa-------UUGCGGUCUUCGa-GCua -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 99913 | 0.7 | 0.867219 |
Target: 5'- gGCCG-CGGUGGacaGCCAGGAGCguuucugUCGGa -3' miRNA: 3'- -CGGCuGUCAUUg--CGGUCUUCG-------AGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 81324 | 0.7 | 0.860235 |
Target: 5'- cGCCGugGucGUGGCGCCcuuGGucAGCUCGGc -3' miRNA: 3'- -CGGCugU--CAUUGCGGu--CU--UCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 75688 | 0.72 | 0.732592 |
Target: 5'- gGCCGcGCGcgAGCGCCGGGcccAGCUCGAg -3' miRNA: 3'- -CGGC-UGUcaUUGCGGUCU---UCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 39601 | 0.74 | 0.649867 |
Target: 5'- aCCGGCAG--ACGCUGGAcgAGCUCGAg -3' miRNA: 3'- cGGCUGUCauUGCGGUCU--UCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 34300 | 0.75 | 0.566119 |
Target: 5'- -aCGACAGcGACGCCggucccGGAGGCUCGGg -3' miRNA: 3'- cgGCUGUCaUUGCGG------UCUUCGAGCUa -5' |
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5874 | 5' | -53 | NC_001806.1 | + | 54227 | 0.78 | 0.419527 |
Target: 5'- gGCCGGCGGgugAGCGCgCGGAuGCUCGGc -3' miRNA: 3'- -CGGCUGUCa--UUGCG-GUCUuCGAGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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