miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5875 3' -56.9 NC_001806.1 + 26134 0.66 0.895729
Target:  5'- gCGGgGGgaggagCGGGGGGAGGaGcgGGGGGa -3'
miRNA:   3'- -GCUgCCa-----GUUCCCCUCC-CaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 62467 0.66 0.895729
Target:  5'- aGGCGGacCAGGGuGGAGGcugGGAGGg -3'
miRNA:   3'- gCUGCCa-GUUCC-CCUCCcaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 20716 0.66 0.895729
Target:  5'- gGugGGccCGccGGGGGGGcgGGGGGCc -3'
miRNA:   3'- gCugCCa-GUucCCCUCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 25990 0.66 0.895729
Target:  5'- gCGGgGGgaggagCGGGGGGAGGaGcgGGGGGa -3'
miRNA:   3'- -GCUgCCa-----GUUCCCCUCC-CaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 26026 0.66 0.895729
Target:  5'- gCGGgGGgaggagCGGGGGGAGGaGcgGGGGGa -3'
miRNA:   3'- -GCUgCCa-----GUUCCCCUCC-CaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 26062 0.66 0.895729
Target:  5'- gCGGgGGgaggagCGGGGGGAGGaGcgGGGGGa -3'
miRNA:   3'- -GCUgCCa-----GUUCCCCUCC-CaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 26098 0.66 0.895729
Target:  5'- gCGGgGGgaggagCGGGGGGAGGaGcgGGGGGa -3'
miRNA:   3'- -GCUgCCa-----GUUCCCCUCC-CaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 25910 0.66 0.895079
Target:  5'- gCGGCGGUCcGGGcGGcgugcgcgcgcgcGGcGGgcgUGGGGGCg -3'
miRNA:   3'- -GCUGCCAGuUCC-CC-------------UC-CCa--ACCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 146821 0.66 0.889801
Target:  5'- -cGCGGUCucGGGGAgcaGGGUgcggcggcuccagccGGGGACc -3'
miRNA:   3'- gcUGCCAGuuCCCCU---CCCAa--------------CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 29996 0.66 0.882313
Target:  5'- gGGgGGUUggGGuuGGGGUUGGGGu- -3'
miRNA:   3'- gCUgCCAGuuCCccUCCCAACCUCug -5'
5875 3' -56.9 NC_001806.1 + 10486 0.66 0.875277
Target:  5'- uCGGCuggGGUCGGGGGuGGGGUcggaacUGGGGcCg -3'
miRNA:   3'- -GCUG---CCAGUUCCCcUCCCA------ACCUCuG- -5'
5875 3' -56.9 NC_001806.1 + 32843 0.66 0.875277
Target:  5'- gGAgGGUacuGGGGGugaagaaggGGGGggGGAGAa -3'
miRNA:   3'- gCUgCCAgu-UCCCC---------UCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 120330 0.66 0.875277
Target:  5'- gGGCGGUCGGGGGcGGcGGGUcgucccgcucGGcGACg -3'
miRNA:   3'- gCUGCCAGUUCCC-CU-CCCAa---------CCuCUG- -5'
5875 3' -56.9 NC_001806.1 + 111331 0.66 0.875277
Target:  5'- aCGGgGGUgGGGcGGGGGGGggGGuauauaAGGCc -3'
miRNA:   3'- -GCUgCCAgUUC-CCCUCCCaaCC------UCUG- -5'
5875 3' -56.9 NC_001806.1 + 15382 0.66 0.868028
Target:  5'- cCGGUGGUCuggaguuGGGGuuGGGUgguggaGGAGACg -3'
miRNA:   3'- -GCUGCCAGuu-----CCCCu-CCCAa-----CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 147477 0.66 0.86507
Target:  5'- aGGCGGcgGAGGGGAGcGGggcggcgccggaGGGGGCg -3'
miRNA:   3'- gCUGCCagUUCCCCUC-CCaa----------CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 95430 0.66 0.863579
Target:  5'- -cGCGGgccCGGGGGGcAGGGgcccgagacguggGGGGACa -3'
miRNA:   3'- gcUGCCa--GUUCCCC-UCCCaa-----------CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 56657 0.66 0.860572
Target:  5'- cCGGCGGcCcguGGGaucguuGGGGGGUcgggGGGGACg -3'
miRNA:   3'- -GCUGCCaGu--UCC------CCUCCCAa---CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 33645 0.66 0.860572
Target:  5'- -cACGGgCGGGGGGGGGGUgucGcGGGCc -3'
miRNA:   3'- gcUGCCaGUUCCCCUCCCAa--CcUCUG- -5'
5875 3' -56.9 NC_001806.1 + 72536 0.67 0.852914
Target:  5'- gCGugGGcCcccGGGaGGGGGUaGGGGGCc -3'
miRNA:   3'- -GCugCCaGuu-CCC-CUCCCAaCCUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.