miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5875 3' -56.9 NC_001806.1 + 34778 0.86 0.08645
Target:  5'- gGGCGGUUcgGGGGGGGGGGggGGGGGCg -3'
miRNA:   3'- gCUGCCAG--UUCCCCUCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 32028 0.82 0.164625
Target:  5'- gGGCGGagGGGuGGGGGGGggGGAGACa -3'
miRNA:   3'- gCUGCCagUUC-CCCUCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 71533 0.79 0.226801
Target:  5'- gGGCGGgCGGGGGGGGGGgUGGaAGACc -3'
miRNA:   3'- gCUGCCaGUUCCCCUCCCaACC-UCUG- -5'
5875 3' -56.9 NC_001806.1 + 127396 0.77 0.322014
Target:  5'- cCGG-GGUUGAGGGGGGGGg-GGGGACg -3'
miRNA:   3'- -GCUgCCAGUUCCCCUCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 14212 0.76 0.359779
Target:  5'- -cGCGGagAAGGGGGGGGggGGGGGa -3'
miRNA:   3'- gcUGCCagUUCCCCUCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 42314 0.75 0.409026
Target:  5'- uGACGGugUCGGGGcGGGGGGcgUGGGGAa -3'
miRNA:   3'- gCUGCC--AGUUCC-CCUCCCa-ACCUCUg -5'
5875 3' -56.9 NC_001806.1 + 105106 0.74 0.462265
Target:  5'- gCGGCgGGUCGuGGcGGGAGGaUUGGGGACa -3'
miRNA:   3'- -GCUG-CCAGU-UC-CCCUCCcAACCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 33984 0.73 0.480809
Target:  5'- cCGGgGGUCGccGGGGcAGGGgcGGGGGCg -3'
miRNA:   3'- -GCUgCCAGUu-CCCC-UCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 6411 0.73 0.528648
Target:  5'- gGGCGGagGAGGGGgggacgcgGGGGUggaggaggGGGGACg -3'
miRNA:   3'- gCUGCCagUUCCCC--------UCCCAa-------CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 143808 0.72 0.548283
Target:  5'- gGACGG---AGGGaGGGGGUgacgGGGGACg -3'
miRNA:   3'- gCUGCCaguUCCC-CUCCCAa---CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 34936 0.72 0.588173
Target:  5'- gGGgGGagAGGGGaGAGGGggGGAGAg -3'
miRNA:   3'- gCUgCCagUUCCC-CUCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 35038 0.72 0.588173
Target:  5'- gGGgGGagAGGGGaGAGGGggGGAGAg -3'
miRNA:   3'- gCUgCCagUUCCC-CUCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 34970 0.72 0.588173
Target:  5'- gGGgGGagAGGGGaGAGGGggGGAGAg -3'
miRNA:   3'- gCUgCCagUUCCC-CUCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 35004 0.72 0.588173
Target:  5'- gGGgGGagAGGGGaGAGGGggGGAGAg -3'
miRNA:   3'- gCUgCCagUUCCC-CUCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 34903 0.72 0.588173
Target:  5'- gGGgGGagAGGGGaGAGGGggGGAGAg -3'
miRNA:   3'- gCUgCCagUUCCC-CUCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 25167 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 25099 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 25269 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 25303 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 6544 0.71 0.628556
Target:  5'- gGGCGGagGAGGGGggacgcGGGGgcGGAGGa -3'
miRNA:   3'- gCUGCCagUUCCCC------UCCCaaCCUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.