miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5875 3' -56.9 NC_001806.1 + 6411 0.73 0.528648
Target:  5'- gGGCGGagGAGGGGgggacgcgGGGGUggaggaggGGGGACg -3'
miRNA:   3'- gCUGCCagUUCCCC--------UCCCAa-------CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 6456 0.71 0.628556
Target:  5'- gGGCGGagGAGGGGggacgcGGGGgcGGAGGa -3'
miRNA:   3'- gCUGCCagUUCCCC------UCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 6500 0.71 0.628556
Target:  5'- gGGCGGagGAGGGGggacgcGGGGgcGGAGGa -3'
miRNA:   3'- gCUGCCagUUCCCC------UCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 6544 0.71 0.628556
Target:  5'- gGGCGGagGAGGGGggacgcGGGGgcGGAGGa -3'
miRNA:   3'- gCUGCCagUUCCCC------UCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 10383 0.67 0.820394
Target:  5'- aGACc-UCGGGGGGGcGGggGGAGGCg -3'
miRNA:   3'- gCUGccAGUUCCCCUcCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 10486 0.66 0.875277
Target:  5'- uCGGCuggGGUCGGGGGuGGGGUcggaacUGGGGcCg -3'
miRNA:   3'- -GCUG---CCAGUUCCCcUCCCA------ACCUCuG- -5'
5875 3' -56.9 NC_001806.1 + 11806 0.69 0.725633
Target:  5'- uGGUGGUCGAGGGGguGGaGGUgguggucgagggggUGGAGGCc -3'
miRNA:   3'- gCUGCCAGUUCCCC--UC-CCA--------------ACCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 14212 0.76 0.359779
Target:  5'- -cGCGGagAAGGGGGGGGggGGGGGa -3'
miRNA:   3'- gcUGCCagUUCCCCUCCCaaCCUCUg -5'
5875 3' -56.9 NC_001806.1 + 14361 0.7 0.658897
Target:  5'- gGACGGcaaagcccccCAGGGGGcuGGGGUgaGGGGACa -3'
miRNA:   3'- gCUGCCa---------GUUCCCC--UCCCAa-CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 15382 0.66 0.868028
Target:  5'- cCGGUGGUCuggaguuGGGGuuGGGUgguggaGGAGACg -3'
miRNA:   3'- -GCUGCCAGuu-----CCCCu-CCCAa-----CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 20394 0.67 0.845061
Target:  5'- cCGGCGGgCGGGaccGGGGGGcccGGGGACg -3'
miRNA:   3'- -GCUGCCaGUUCc--CCUCCCaa-CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 20716 0.66 0.895729
Target:  5'- gGugGGccCGccGGGGGGGcgGGGGGCc -3'
miRNA:   3'- gCugCCa-GUucCCCUCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 21189 0.67 0.820394
Target:  5'- gCGACGaG-CGGGGGGcccucGGGUggggcgcGGAGACg -3'
miRNA:   3'- -GCUGC-CaGUUCCCCu----CCCAa------CCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 24870 0.69 0.746904
Target:  5'- uGGCGG-CGgcGGGGGccguggaggugcuGGGGgcGGAGGCg -3'
miRNA:   3'- gCUGCCaGU--UCCCC-------------UCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 24971 0.67 0.828794
Target:  5'- aCGGCGGcgcguUCGAGGGGgacGGGGUgcuguaacgGGccgGGACg -3'
miRNA:   3'- -GCUGCC-----AGUUCCCC---UCCCAa--------CC---UCUG- -5'
5875 3' -56.9 NC_001806.1 + 25099 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 25133 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 25167 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 25201 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5'
5875 3' -56.9 NC_001806.1 + 25235 0.71 0.628556
Target:  5'- gGGCGGgagggggCGAGGGGcGGGa-GGGGGCg -3'
miRNA:   3'- gCUGCCa------GUUCCCCuCCCaaCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.