miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5875 5' -53.1 NC_001806.1 + 141101 0.66 0.981224
Target:  5'- aGGGAAc---UCCCUCUCCcccgacgcccgacaUCACCGAc -3'
miRNA:   3'- -CCCUUacuuAGGGAGGGGa-------------AGUGGCU- -5'
5875 5' -53.1 NC_001806.1 + 121567 0.66 0.980369
Target:  5'- cGGGGGgcugcGAGUCCUgcgCCCCgcCGCCc- -3'
miRNA:   3'- -CCCUUa----CUUAGGGa--GGGGaaGUGGcu -5'
5875 5' -53.1 NC_001806.1 + 89991 0.66 0.97715
Target:  5'- cGGucuccaaCCCUCCCCUUgACCGu -3'
miRNA:   3'- cCCuuacuuaGGGAGGGGAAgUGGCu -5'
5875 5' -53.1 NC_001806.1 + 112994 0.66 0.975657
Target:  5'- cGGGAccGUGug-CCa--CCCUUCGCUGAu -3'
miRNA:   3'- -CCCU--UACuuaGGgagGGGAAGUGGCU- -5'
5875 5' -53.1 NC_001806.1 + 30425 0.67 0.962475
Target:  5'- cGGGcGUGGAgggugggcacgggCCCUCCCgCggCGCCGc -3'
miRNA:   3'- -CCCuUACUUa------------GGGAGGG-GaaGUGGCu -5'
5875 5' -53.1 NC_001806.1 + 33324 0.67 0.948514
Target:  5'- gGGGAGgauGUCgCCgacgCCCCUUgGCCGc -3'
miRNA:   3'- -CCCUUacuUAG-GGa---GGGGAAgUGGCu -5'
5875 5' -53.1 NC_001806.1 + 111560 0.68 0.944096
Target:  5'- uGGggUGGAUCuuagCCUCCCCgg-GCCa- -3'
miRNA:   3'- cCCuuACUUAG----GGAGGGGaagUGGcu -5'
5875 5' -53.1 NC_001806.1 + 62487 0.69 0.906368
Target:  5'- uGGGA--GggUCCCgUCCgCCUUCuCCGu -3'
miRNA:   3'- -CCCUuaCuuAGGG-AGG-GGAAGuGGCu -5'
5875 5' -53.1 NC_001806.1 + 21005 0.69 0.893408
Target:  5'- cGGGGuccGUGggUcucgccCCCUCCCCc-CAUCGAg -3'
miRNA:   3'- -CCCU---UACuuA------GGGAGGGGaaGUGGCU- -5'
5875 5' -53.1 NC_001806.1 + 100356 0.69 0.893408
Target:  5'- uGGGAGgccgGGAUCCacagguagCUCCCg-UCGCCGGg -3'
miRNA:   3'- -CCCUUa---CUUAGG--------GAGGGgaAGUGGCU- -5'
5875 5' -53.1 NC_001806.1 + 52002 0.69 0.893408
Target:  5'- cGGc-UGAGUCCCUCCaa-UCGCCGGu -3'
miRNA:   3'- cCCuuACUUAGGGAGGggaAGUGGCU- -5'
5875 5' -53.1 NC_001806.1 + 80075 0.7 0.886576
Target:  5'- cGGGA----AUCCCU-CCCUUCACCc- -3'
miRNA:   3'- -CCCUuacuUAGGGAgGGGAAGUGGcu -5'
5875 5' -53.1 NC_001806.1 + 78362 0.71 0.824092
Target:  5'- uGGGAAagcUGAGUCCCgCCCaggCGCUGGc -3'
miRNA:   3'- -CCCUU---ACUUAGGGaGGGgaaGUGGCU- -5'
5875 5' -53.1 NC_001806.1 + 147134 0.72 0.759982
Target:  5'- aGGGAGguuuccucuUGucUCCCUCCCagggCACCGAc -3'
miRNA:   3'- -CCCUU---------ACuuAGGGAGGGgaa-GUGGCU- -5'
5875 5' -53.1 NC_001806.1 + 45524 0.74 0.659376
Target:  5'- uGGGggUGGaggguGUCCCaggacuUCCCCUUCcucgcggaaACCGAg -3'
miRNA:   3'- -CCCuuACU-----UAGGG------AGGGGAAG---------UGGCU- -5'
5875 5' -53.1 NC_001806.1 + 109243 0.76 0.556379
Target:  5'- cGGGGcgGAAUCCUgggCCCCgggCACCa- -3'
miRNA:   3'- -CCCUuaCUUAGGGa--GGGGaa-GUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.