Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 109243 | 0.76 | 0.556379 |
Target: 5'- cGGGGcgGAAUCCUgggCCCCgggCACCa- -3' miRNA: 3'- -CCCUuaCUUAGGGa--GGGGaa-GUGGcu -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 45524 | 0.74 | 0.659376 |
Target: 5'- uGGGggUGGaggguGUCCCaggacuUCCCCUUCcucgcggaaACCGAg -3' miRNA: 3'- -CCCuuACU-----UAGGG------AGGGGAAG---------UGGCU- -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 147134 | 0.72 | 0.759982 |
Target: 5'- aGGGAGguuuccucuUGucUCCCUCCCagggCACCGAc -3' miRNA: 3'- -CCCUU---------ACuuAGGGAGGGgaa-GUGGCU- -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 78362 | 0.71 | 0.824092 |
Target: 5'- uGGGAAagcUGAGUCCCgCCCaggCGCUGGc -3' miRNA: 3'- -CCCUU---ACUUAGGGaGGGgaaGUGGCU- -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 80075 | 0.7 | 0.886576 |
Target: 5'- cGGGA----AUCCCU-CCCUUCACCc- -3' miRNA: 3'- -CCCUuacuUAGGGAgGGGAAGUGGcu -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 21005 | 0.69 | 0.893408 |
Target: 5'- cGGGGuccGUGggUcucgccCCCUCCCCc-CAUCGAg -3' miRNA: 3'- -CCCU---UACuuA------GGGAGGGGaaGUGGCU- -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 100356 | 0.69 | 0.893408 |
Target: 5'- uGGGAGgccgGGAUCCacagguagCUCCCg-UCGCCGGg -3' miRNA: 3'- -CCCUUa---CUUAGG--------GAGGGgaAGUGGCU- -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 52002 | 0.69 | 0.893408 |
Target: 5'- cGGc-UGAGUCCCUCCaa-UCGCCGGu -3' miRNA: 3'- cCCuuACUUAGGGAGGggaAGUGGCU- -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 62487 | 0.69 | 0.906368 |
Target: 5'- uGGGA--GggUCCCgUCCgCCUUCuCCGu -3' miRNA: 3'- -CCCUuaCuuAGGG-AGG-GGAAGuGGCu -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 111560 | 0.68 | 0.944096 |
Target: 5'- uGGggUGGAUCuuagCCUCCCCgg-GCCa- -3' miRNA: 3'- cCCuuACUUAG----GGAGGGGaagUGGcu -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 33324 | 0.67 | 0.948514 |
Target: 5'- gGGGAGgauGUCgCCgacgCCCCUUgGCCGc -3' miRNA: 3'- -CCCUUacuUAG-GGa---GGGGAAgUGGCu -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 30425 | 0.67 | 0.962475 |
Target: 5'- cGGGcGUGGAgggugggcacgggCCCUCCCgCggCGCCGc -3' miRNA: 3'- -CCCuUACUUa------------GGGAGGG-GaaGUGGCu -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 112994 | 0.66 | 0.975657 |
Target: 5'- cGGGAccGUGug-CCa--CCCUUCGCUGAu -3' miRNA: 3'- -CCCU--UACuuaGGgagGGGAAGUGGCU- -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 89991 | 0.66 | 0.97715 |
Target: 5'- cGGucuccaaCCCUCCCCUUgACCGu -3' miRNA: 3'- cCCuuacuuaGGGAGGGGAAgUGGCu -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 121567 | 0.66 | 0.980369 |
Target: 5'- cGGGGGgcugcGAGUCCUgcgCCCCgcCGCCc- -3' miRNA: 3'- -CCCUUa----CUUAGGGa--GGGGaaGUGGcu -5' |
|||||||
5875 | 5' | -53.1 | NC_001806.1 | + | 141101 | 0.66 | 0.981224 |
Target: 5'- aGGGAAc---UCCCUCUCCcccgacgcccgacaUCACCGAc -3' miRNA: 3'- -CCCUUacuuAGGGAGGGGa-------------AGUGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home