miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5877 3' -57.1 NC_001806.1 + 16935 0.66 0.901046
Target:  5'- cACCCGGgaCGgcuuugucUCCggcgGGACGGCUCCu- -3'
miRNA:   3'- -UGGGCCaaGU--------AGGa---CCUGUUGGGGcc -5'
5877 3' -57.1 NC_001806.1 + 52904 0.66 0.901046
Target:  5'- gUCCGGcgcgCGUCuCUGGGgAGCCUCGa -3'
miRNA:   3'- uGGGCCaa--GUAG-GACCUgUUGGGGCc -5'
5877 3' -57.1 NC_001806.1 + 51674 0.66 0.894685
Target:  5'- uGCCCag--CggCCUGGACGuCCCCGa -3'
miRNA:   3'- -UGGGccaaGuaGGACCUGUuGGGGCc -5'
5877 3' -57.1 NC_001806.1 + 31049 0.66 0.894685
Target:  5'- cAUCgGGgcguacgUgGUCCUGGugGACCagaCGGg -3'
miRNA:   3'- -UGGgCCa------AgUAGGACCugUUGGg--GCC- -5'
5877 3' -57.1 NC_001806.1 + 109236 0.66 0.888104
Target:  5'- gGCCgggCGGggCGgaaUCCUGG---GCCCCGGg -3'
miRNA:   3'- -UGG---GCCaaGU---AGGACCuguUGGGGCC- -5'
5877 3' -57.1 NC_001806.1 + 147306 0.66 0.888104
Target:  5'- uCCCGGgccCAcCCUGGccGCGcccCCCCGGc -3'
miRNA:   3'- uGGGCCaa-GUaGGACC--UGUu--GGGGCC- -5'
5877 3' -57.1 NC_001806.1 + 30662 0.66 0.886761
Target:  5'- gGCCCGGgaccccccugaCGUCCUcGGCGGCCuCCGc -3'
miRNA:   3'- -UGGGCCaa---------GUAGGAcCUGUUGG-GGCc -5'
5877 3' -57.1 NC_001806.1 + 147042 0.66 0.881304
Target:  5'- cGCCCGcGg-------GGACGGCCCCGGa -3'
miRNA:   3'- -UGGGC-CaaguaggaCCUGUUGGGGCC- -5'
5877 3' -57.1 NC_001806.1 + 3485 0.66 0.869984
Target:  5'- cGCCCGGcgUCGUCgUcggcgucggcguggcGGGCGGCgUCGGg -3'
miRNA:   3'- -UGGGCCa-AGUAGgA---------------CCUGUUGgGGCC- -5'
5877 3' -57.1 NC_001806.1 + 57043 0.66 0.867071
Target:  5'- gGCCCGGgg---CCgGGGC--CCCCGGc -3'
miRNA:   3'- -UGGGCCaaguaGGaCCUGuuGGGGCC- -5'
5877 3' -57.1 NC_001806.1 + 95740 0.67 0.859646
Target:  5'- cGCaCCGGUUCAugcgagcgucucUCCUGcGACAccagguggaCCCGGc -3'
miRNA:   3'- -UG-GGCCAAGU------------AGGAC-CUGUug-------GGGCC- -5'
5877 3' -57.1 NC_001806.1 + 137623 0.67 0.852024
Target:  5'- cGCCCuGgcCGcCCUGGAacgGACCCUGGg -3'
miRNA:   3'- -UGGGcCaaGUaGGACCUg--UUGGGGCC- -5'
5877 3' -57.1 NC_001806.1 + 73983 0.67 0.852024
Target:  5'- uGCCCGcccCggCCgGGGCGGCCCCGc -3'
miRNA:   3'- -UGGGCcaaGuaGGaCCUGUUGGGGCc -5'
5877 3' -57.1 NC_001806.1 + 82132 0.67 0.84421
Target:  5'- cGCCCcuugauGGUgucCAggucgCCgagGGACAGCCCCGu -3'
miRNA:   3'- -UGGG------CCAa--GUa----GGa--CCUGUUGGGGCc -5'
5877 3' -57.1 NC_001806.1 + 88439 0.67 0.84421
Target:  5'- aACCCGGggUUGUCCaGGAUGAa-CCGGg -3'
miRNA:   3'- -UGGGCCa-AGUAGGaCCUGUUggGGCC- -5'
5877 3' -57.1 NC_001806.1 + 76217 0.67 0.84421
Target:  5'- uAUCCGcGaUCG-CCUGGACGcCCuCCGGg -3'
miRNA:   3'- -UGGGC-CaAGUaGGACCUGUuGG-GGCC- -5'
5877 3' -57.1 NC_001806.1 + 35103 0.67 0.837018
Target:  5'- cCCCGGgguuauaaaaggcgCGUCCcgUGGACGcgGCCCuCGGu -3'
miRNA:   3'- uGGGCCaa------------GUAGG--ACCUGU--UGGG-GCC- -5'
5877 3' -57.1 NC_001806.1 + 56273 0.67 0.83621
Target:  5'- cCCCGGggUCcuUCCUGugcaGGCGACgCCGGa -3'
miRNA:   3'- uGGGCCa-AGu-AGGAC----CUGUUGgGGCC- -5'
5877 3' -57.1 NC_001806.1 + 50946 0.67 0.83621
Target:  5'- cCCCGGgcccccgUGUCCgGGACGgcagACCCCGc -3'
miRNA:   3'- uGGGCCaa-----GUAGGaCCUGU----UGGGGCc -5'
5877 3' -57.1 NC_001806.1 + 111397 0.67 0.8354
Target:  5'- cACUgGGUUC-UCCUGGAaCGAggccgcagccuucUCCCGGu -3'
miRNA:   3'- -UGGgCCAAGuAGGACCU-GUU-------------GGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.