miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5877 5' -56.8 NC_001806.1 + 101052 0.66 0.908212
Target:  5'- cGCUGGcgGCCGUCUCGAGgaCGcGCUc -3'
miRNA:   3'- cCGACCa-UGGCAGAGUUUg-GCcCGGc -5'
5877 5' -56.8 NC_001806.1 + 2807 0.66 0.908212
Target:  5'- gGGCUGG-GCgGgggCGGGCuCGGGCCc -3'
miRNA:   3'- -CCGACCaUGgCagaGUUUG-GCCCGGc -5'
5877 5' -56.8 NC_001806.1 + 33140 0.66 0.902092
Target:  5'- cGGUcGGggGCCc-CUCGucCCGGGCCGu -3'
miRNA:   3'- -CCGaCCa-UGGcaGAGUuuGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 24989 0.66 0.902092
Target:  5'- gGGacggGGUGCUGUaaCGGGCCGGGaCGg -3'
miRNA:   3'- -CCga--CCAUGGCAgaGUUUGGCCCgGC- -5'
5877 5' -56.8 NC_001806.1 + 128267 0.66 0.895747
Target:  5'- aGGCguuuGUcaGCaCGgcgCGAGCCGGGCCGa -3'
miRNA:   3'- -CCGac--CA--UG-GCagaGUUUGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 11861 0.66 0.875385
Target:  5'- gGGUUGGUauacgcucGCCGgggC-CAGACgCGgGGCCGa -3'
miRNA:   3'- -CCGACCA--------UGGCa--GaGUUUG-GC-CCGGC- -5'
5877 5' -56.8 NC_001806.1 + 85075 0.66 0.875385
Target:  5'- cGCUGcccuuCUGUCUggacCAGACCGuGGCCGa -3'
miRNA:   3'- cCGACcau--GGCAGA----GUUUGGC-CCGGC- -5'
5877 5' -56.8 NC_001806.1 + 140882 0.66 0.875385
Target:  5'- cGUaGGgcCCGUCgguaCAGGgCGGGCCGu -3'
miRNA:   3'- cCGaCCauGGCAGa---GUUUgGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 44486 0.67 0.868171
Target:  5'- uGGCugcacgaccgUGGUGCCGUUU---GCCGGGaCGg -3'
miRNA:   3'- -CCG----------ACCAUGGCAGAguuUGGCCCgGC- -5'
5877 5' -56.8 NC_001806.1 + 18475 0.67 0.868171
Target:  5'- aGCUGGUAUCGgccaCgaccgCAGACagccaGGGCUGg -3'
miRNA:   3'- cCGACCAUGGCa---Ga----GUUUGg----CCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 126572 0.67 0.86075
Target:  5'- aGGC-GGUGcuCCGcCgCGGAUCGGGCCu -3'
miRNA:   3'- -CCGaCCAU--GGCaGaGUUUGGCCCGGc -5'
5877 5' -56.8 NC_001806.1 + 101960 0.67 0.85313
Target:  5'- aGCUGGgucaG-CUCGAccGCCGGGUCGg -3'
miRNA:   3'- cCGACCauggCaGAGUU--UGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 75404 0.67 0.85313
Target:  5'- cGGCUGccGCCGaccuugucgUC-CAGgugcGCCGGGCCGc -3'
miRNA:   3'- -CCGACcaUGGC---------AGaGUU----UGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 3343 0.67 0.845315
Target:  5'- cGGCcgcgGGggGCUGg--CGGGCCGGGCCc -3'
miRNA:   3'- -CCGa---CCa-UGGCagaGUUUGGCCCGGc -5'
5877 5' -56.8 NC_001806.1 + 76639 0.67 0.837312
Target:  5'- aGgUGGUcGCCGUCcCGgcGACCGuGGCCa -3'
miRNA:   3'- cCgACCA-UGGCAGaGU--UUGGC-CCGGc -5'
5877 5' -56.8 NC_001806.1 + 24480 0.67 0.837312
Target:  5'- cGCcGGUGCCcauGUCcccgcgCGAguaccGCCGGGCCGu -3'
miRNA:   3'- cCGaCCAUGG---CAGa-----GUU-----UGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 73937 0.68 0.803567
Target:  5'- cGCggGGUcgacGCgGUCUCAcagcacGCCGGGCCc -3'
miRNA:   3'- cCGa-CCA----UGgCAGAGUu-----UGGCCCGGc -5'
5877 5' -56.8 NC_001806.1 + 145644 0.68 0.785759
Target:  5'- uGGCgGGUGCCGgg--GGACCGGGgUGa -3'
miRNA:   3'- -CCGaCCAUGGCagagUUUGGCCCgGC- -5'
5877 5' -56.8 NC_001806.1 + 130925 0.68 0.785759
Target:  5'- aGCUGGUG----UUCGAACUGGGCCa -3'
miRNA:   3'- cCGACCAUggcaGAGUUUGGCCCGGc -5'
5877 5' -56.8 NC_001806.1 + 23899 0.68 0.785759
Target:  5'- uGgUGGUGCUGUaCUCGccgcuGCCGGGCg- -3'
miRNA:   3'- cCgACCAUGGCA-GAGUu----UGGCCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.