miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5877 5' -56.8 NC_001806.1 + 27777 0.69 0.776651
Target:  5'- gGGUUGGgcCCccaaaUCggGGGCCGGGCCGu -3'
miRNA:   3'- -CCGACCauGGc----AGagUUUGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 134815 0.69 0.776651
Target:  5'- uGCUGGUGgCGg--UAAACCGcGGCUGg -3'
miRNA:   3'- cCGACCAUgGCagaGUUUGGC-CCGGC- -5'
5877 5' -56.8 NC_001806.1 + 131973 0.69 0.739048
Target:  5'- cGGCccUGG-AgCG-C-CAGACCGGGCCGg -3'
miRNA:   3'- -CCG--ACCaUgGCaGaGUUUGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 109477 0.69 0.738088
Target:  5'- uGGCUGGcguggggcggggaUGCCGUCaaaCAGGCCgcucaccaGGGCCu -3'
miRNA:   3'- -CCGACC-------------AUGGCAGa--GUUUGG--------CCCGGc -5'
5877 5' -56.8 NC_001806.1 + 124497 0.69 0.7294
Target:  5'- cGGUcGGacGCCGUCUCGcuccGgCGGGCCGu -3'
miRNA:   3'- -CCGaCCa-UGGCAGAGUu---UgGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 57062 0.7 0.709867
Target:  5'- cGGCUGcGUGCCGggCUCcccgAGACUccacagaacaaGGGCCGc -3'
miRNA:   3'- -CCGAC-CAUGGCa-GAG----UUUGG-----------CCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 32969 0.7 0.709867
Target:  5'- gGGCcccuugGGUccGCCGgggCccCGGGCCGGGCCGc -3'
miRNA:   3'- -CCGa-----CCA--UGGCa--Ga-GUUUGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 33023 0.7 0.7
Target:  5'- uGGC-GGUAaccCCGaguguucaUCUCAGGCCccGGGCCGg -3'
miRNA:   3'- -CCGaCCAU---GGC--------AGAGUUUGG--CCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 27347 0.7 0.690079
Target:  5'- gGGCgGGaguUACCGcC-CAAuggGCCGGGCCGc -3'
miRNA:   3'- -CCGaCC---AUGGCaGaGUU---UGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 135848 0.7 0.68011
Target:  5'- aGGgagGGUACCGUCgacGGCCGGGgCGu -3'
miRNA:   3'- -CCga-CCAUGGCAGaguUUGGCCCgGC- -5'
5877 5' -56.8 NC_001806.1 + 2925 0.7 0.670103
Target:  5'- cGCgGGccGCCGcCUCcgggcGGCCGGGCCGg -3'
miRNA:   3'- cCGaCCa-UGGCaGAGu----UUGGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 76563 0.71 0.639934
Target:  5'- cGGgaGGUGCUGgccgCgcgCGAgcGCCGGGCCc -3'
miRNA:   3'- -CCgaCCAUGGCa---Ga--GUU--UGGCCCGGc -5'
5877 5' -56.8 NC_001806.1 + 25600 0.71 0.629856
Target:  5'- gGGCUGGgGCCGgggaGGGCUGgGGCCGg -3'
miRNA:   3'- -CCGACCaUGGCagagUUUGGC-CCGGC- -5'
5877 5' -56.8 NC_001806.1 + 25568 0.71 0.629856
Target:  5'- gGGCUGGgGCCGgggaGGGCUGgGGCCGg -3'
miRNA:   3'- -CCGACCaUGGCagagUUUGGC-CCGGC- -5'
5877 5' -56.8 NC_001806.1 + 25536 0.71 0.629856
Target:  5'- gGGCUGGgGCCGgggaGGGCUGgGGCCGg -3'
miRNA:   3'- -CCGACCaUGGCagagUUUGGC-CCGGC- -5'
5877 5' -56.8 NC_001806.1 + 148097 0.72 0.559753
Target:  5'- aGGggGGcGCUGUC-CGAGCCGcGGCCGg -3'
miRNA:   3'- -CCgaCCaUGGCAGaGUUUGGC-CCGGC- -5'
5877 5' -56.8 NC_001806.1 + 94175 0.73 0.540066
Target:  5'- cGCUGcGgcgUCGUCUgAGGCCGGGCCu -3'
miRNA:   3'- cCGAC-Cau-GGCAGAgUUUGGCCCGGc -5'
5877 5' -56.8 NC_001806.1 + 34015 0.73 0.53031
Target:  5'- gGGCgggGGUGCuCGUCgaucGACCGGGCUc -3'
miRNA:   3'- -CCGa--CCAUG-GCAGagu-UUGGCCCGGc -5'
5877 5' -56.8 NC_001806.1 + 132980 0.73 0.510998
Target:  5'- cGCUGGUggugGCCGcuccCUCAGAgccCUGGGCCGg -3'
miRNA:   3'- cCGACCA----UGGCa---GAGUUU---GGCCCGGC- -5'
5877 5' -56.8 NC_001806.1 + 144576 0.73 0.501452
Target:  5'- gGGCgcguccgGGUGCCGcggCUCu--CCGGGCCc -3'
miRNA:   3'- -CCGa------CCAUGGCa--GAGuuuGGCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.