miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5878 3' -56.4 NC_001806.1 + 124981 0.65 0.907498
Target:  5'- ---cGGCCUggCGuaugacgucccagaGGGCAUCCGGCGcCa -3'
miRNA:   3'- gcuaCCGGAa-GC--------------CCUGUAGGUCGCuG- -5'
5878 3' -56.4 NC_001806.1 + 74313 0.66 0.903167
Target:  5'- ---cGGCCauccuguugCGGGAUcugAUCCAGCGGg -3'
miRNA:   3'- gcuaCCGGaa-------GCCCUG---UAGGUCGCUg -5'
5878 3' -56.4 NC_001806.1 + 49484 0.66 0.903167
Target:  5'- gCGcgGGCUauUUUGGGGCGggUCGGCGGu -3'
miRNA:   3'- -GCuaCCGG--AAGCCCUGUa-GGUCGCUg -5'
5878 3' -56.4 NC_001806.1 + 23954 0.66 0.903167
Target:  5'- gGggGGCCgcCGGaGugGUCCGccgagcGCGGCg -3'
miRNA:   3'- gCuaCCGGaaGCC-CugUAGGU------CGCUG- -5'
5878 3' -56.4 NC_001806.1 + 4428 0.66 0.896783
Target:  5'- gGGUGGCCcgggCGGGggcgGCGUCCgcccGGgGGCu -3'
miRNA:   3'- gCUACCGGaa--GCCC----UGUAGG----UCgCUG- -5'
5878 3' -56.4 NC_001806.1 + 65666 0.66 0.896783
Target:  5'- gGGUGGCUgcgcUGGGGCcgCCGGCc-- -3'
miRNA:   3'- gCUACCGGaa--GCCCUGuaGGUCGcug -5'
5878 3' -56.4 NC_001806.1 + 89586 0.66 0.896783
Target:  5'- ---cGGgCUUauGGACcgCCGGCGGCc -3'
miRNA:   3'- gcuaCCgGAAgcCCUGuaGGUCGCUG- -5'
5878 3' -56.4 NC_001806.1 + 101055 0.66 0.896783
Target:  5'- uGgcGGCCgucUCGaGGACGcgcUCCAGCuGCa -3'
miRNA:   3'- gCuaCCGGa--AGC-CCUGU---AGGUCGcUG- -5'
5878 3' -56.4 NC_001806.1 + 128209 0.66 0.896783
Target:  5'- gCGAUGGUaUUCaGGGAUA-CC-GCGGCg -3'
miRNA:   3'- -GCUACCGgAAG-CCCUGUaGGuCGCUG- -5'
5878 3' -56.4 NC_001806.1 + 57034 0.66 0.895479
Target:  5'- gGGUGGCCgggcccggggcCGGGGCccCCGGCuGCg -3'
miRNA:   3'- gCUACCGGaa---------GCCCUGuaGGUCGcUG- -5'
5878 3' -56.4 NC_001806.1 + 16702 0.66 0.89017
Target:  5'- gGAUaGGCCacgucgucCGGGGCGUCCucguCGACa -3'
miRNA:   3'- gCUA-CCGGaa------GCCCUGUAGGuc--GCUG- -5'
5878 3' -56.4 NC_001806.1 + 128526 0.66 0.89017
Target:  5'- -cAUGGCCaugCGGGccGCAgCCAGaCGGCg -3'
miRNA:   3'- gcUACCGGaa-GCCC--UGUaGGUC-GCUG- -5'
5878 3' -56.4 NC_001806.1 + 72623 0.66 0.883332
Target:  5'- aCGAcagGGCCUcCGaGACAUCCcgGGgGACg -3'
miRNA:   3'- -GCUa--CCGGAaGCcCUGUAGG--UCgCUG- -5'
5878 3' -56.4 NC_001806.1 + 112130 0.66 0.876272
Target:  5'- ---aGGCCguccUCGGGGCGUUUgagcGCGGCa -3'
miRNA:   3'- gcuaCCGGa---AGCCCUGUAGGu---CGCUG- -5'
5878 3' -56.4 NC_001806.1 + 81606 0.67 0.868996
Target:  5'- gGAcGGCCaUCGGGACcggagGUCgggaAGCGAUa -3'
miRNA:   3'- gCUaCCGGaAGCCCUG-----UAGg---UCGCUG- -5'
5878 3' -56.4 NC_001806.1 + 50704 0.67 0.861508
Target:  5'- --cUGGCCgcCGGGcuCGUCCugcAGCGGCu -3'
miRNA:   3'- gcuACCGGaaGCCCu-GUAGG---UCGCUG- -5'
5878 3' -56.4 NC_001806.1 + 106358 0.67 0.861508
Target:  5'- cCGAccGCCggUUGGGGC--CCGGCGGCa -3'
miRNA:   3'- -GCUacCGGa-AGCCCUGuaGGUCGCUG- -5'
5878 3' -56.4 NC_001806.1 + 136997 0.67 0.853815
Target:  5'- gCGgcGGCCggCGGGGagcgCCAGCuaGACg -3'
miRNA:   3'- -GCuaCCGGaaGCCCUgua-GGUCG--CUG- -5'
5878 3' -56.4 NC_001806.1 + 21761 0.67 0.853815
Target:  5'- gCGcgGGCCgUCGGGcgGgGUCCGucgagcGCGGCg -3'
miRNA:   3'- -GCuaCCGGaAGCCC--UgUAGGU------CGCUG- -5'
5878 3' -56.4 NC_001806.1 + 44404 0.67 0.853815
Target:  5'- gGA-GGCCg-CGGG-CGUUgAGCGACg -3'
miRNA:   3'- gCUaCCGGaaGCCCuGUAGgUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.