miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5878 5' -55.9 NC_001806.1 + 151580 0.66 0.92549
Target:  5'- ---gGCGGCGG-CGGCg-GGCCAUgGa -3'
miRNA:   3'- gacaUGCCGCCuGUUGgaCCGGUAgC- -5'
5878 5' -55.9 NC_001806.1 + 66469 0.66 0.914277
Target:  5'- cCUGU-CGGCGaACuggggguucguGACCUGGCCAg-- -3'
miRNA:   3'- -GACAuGCCGCcUG-----------UUGGACCGGUagc -5'
5878 5' -55.9 NC_001806.1 + 95951 0.66 0.914277
Target:  5'- aUGgggGCGGgGGGCucggguGCUgauugGGCCGUCa -3'
miRNA:   3'- gACa--UGCCgCCUGu-----UGGa----CCGGUAGc -5'
5878 5' -55.9 NC_001806.1 + 94723 0.66 0.914277
Target:  5'- --cUGCGGCGGuaccugccccacGCcGCCgGGCUGUCGg -3'
miRNA:   3'- gacAUGCCGCC------------UGuUGGaCCGGUAGC- -5'
5878 5' -55.9 NC_001806.1 + 52352 0.66 0.913692
Target:  5'- ---cGCGGUGGACAGCCaGGagcguuuCUGUCGg -3'
miRNA:   3'- gacaUGCCGCCUGUUGGaCC-------GGUAGC- -5'
5878 5' -55.9 NC_001806.1 + 41459 0.66 0.908316
Target:  5'- ----uCGGCGGACAcgACCgcuucGGCCAggCGa -3'
miRNA:   3'- gacauGCCGCCUGU--UGGa----CCGGUa-GC- -5'
5878 5' -55.9 NC_001806.1 + 31007 0.66 0.902121
Target:  5'- ---cACGGgGGACuGCCUGcCCAUCc -3'
miRNA:   3'- gacaUGCCgCCUGuUGGACcGGUAGc -5'
5878 5' -55.9 NC_001806.1 + 107724 0.66 0.902121
Target:  5'- -gGUGCGGgGGGCAGUCUG-CCAacgUCGa -3'
miRNA:   3'- gaCAUGCCgCCUGUUGGACcGGU---AGC- -5'
5878 5' -55.9 NC_001806.1 + 79028 0.66 0.895694
Target:  5'- -cGUGCGGUuuguuGGCAGCgaGGCCAcCGa -3'
miRNA:   3'- gaCAUGCCGc----CUGUUGgaCCGGUaGC- -5'
5878 5' -55.9 NC_001806.1 + 51660 0.66 0.895694
Target:  5'- cCUGcagACGGUGGugcccaGCGGCCUGGaCGUCc -3'
miRNA:   3'- -GACa--UGCCGCC------UGUUGGACCgGUAGc -5'
5878 5' -55.9 NC_001806.1 + 111507 0.66 0.895694
Target:  5'- gUGUcuuuCGGUGGACcuug-GGCCGUCGg -3'
miRNA:   3'- gACAu---GCCGCCUGuuggaCCGGUAGC- -5'
5878 5' -55.9 NC_001806.1 + 134834 0.67 0.889038
Target:  5'- -cGgcUGGCGGucgcCGACCUGGCgCAccUCGc -3'
miRNA:   3'- gaCauGCCGCCu---GUUGGACCG-GU--AGC- -5'
5878 5' -55.9 NC_001806.1 + 108645 0.67 0.889038
Target:  5'- gUGUGCGuggcuGCGGACAugCgcccgcGGCCAgCGu -3'
miRNA:   3'- gACAUGC-----CGCCUGUugGa-----CCGGUaGC- -5'
5878 5' -55.9 NC_001806.1 + 69146 0.67 0.889038
Target:  5'- -cGUGCGGaCGGACG---UGGCCGUg- -3'
miRNA:   3'- gaCAUGCC-GCCUGUuggACCGGUAgc -5'
5878 5' -55.9 NC_001806.1 + 22443 0.67 0.889038
Target:  5'- cCUGgcgcacGCGGCGG-CcGCCgUGGCCAUg- -3'
miRNA:   3'- -GACa-----UGCCGCCuGuUGG-ACCGGUAgc -5'
5878 5' -55.9 NC_001806.1 + 128982 0.67 0.882158
Target:  5'- uUGUACGG-GGGgGAUUUGGCCGa-- -3'
miRNA:   3'- gACAUGCCgCCUgUUGGACCGGUagc -5'
5878 5' -55.9 NC_001806.1 + 3303 0.67 0.875056
Target:  5'- -cGUGCGGCGG-CGGCggggaagcggGGCCcgCGg -3'
miRNA:   3'- gaCAUGCCGCCuGUUGga--------CCGGuaGC- -5'
5878 5' -55.9 NC_001806.1 + 27866 0.67 0.872883
Target:  5'- ---cGCGGUGGGCcuGCCUccccugggacgcgcGGCCAUUGg -3'
miRNA:   3'- gacaUGCCGCCUGu-UGGA--------------CCGGUAGC- -5'
5878 5' -55.9 NC_001806.1 + 37761 0.67 0.867738
Target:  5'- gUGUcgGCGGCGGGCG-CCUuucgcuccggGGCCGgggcgCGg -3'
miRNA:   3'- gACA--UGCCGCCUGUuGGA----------CCGGUa----GC- -5'
5878 5' -55.9 NC_001806.1 + 119746 0.67 0.866249
Target:  5'- cCUGgcCGGCGGcgACGGCCggacuggcugugGaGCCGUCGu -3'
miRNA:   3'- -GACauGCCGCC--UGUUGGa-----------C-CGGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.