miRNA: 3'- acAGGAGGU--UCUaaaAGGUaCG--UGAG- -5'
miRNA: 3'- -ACAGGAgguUCUa-AAAGGUACGUGAG- -5'
miRNA: 3'- -ACAG-GAGGUUCuaaaaGGUACGUGag -5'
miRNA: 3'- -ACAGGAGGUUCUAAAAGGUACGUGAG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 588 | 5' | -48.2 | AC_000015.1 | + | 2175 | 0.66 | 0.904584 |
|
Target: 5'- -cUCCUCCAcuGGAgggUCCAgGCcgGCUCu -3' miRNA: 3'- acAGGAGGU--UCUaaaAGGUaCG--UGAG- -5' |
|||||||
| 588 | 5' | -48.2 | AC_000015.1 | + | 1470 | 0.68 | 0.82557 |
|
Target: 5'- uUGUCUU---GGAcgUUUCCGUGUACUCa -3' miRNA: 3'- -ACAGGAgguUCUa-AAAGGUACGUGAG- -5' |
|||||||
| 588 | 5' | -48.2 | AC_000015.1 | + | 17488 | 0.68 | 0.82557 |
|
Target: 5'- aUGUCgCUCCAGGugc--CCAUGUACg- -3' miRNA: 3'- -ACAG-GAGGUUCuaaaaGGUACGUGag -5' |
|||||||
| 588 | 5' | -48.2 | AC_000015.1 | + | 4440 | 1.12 | 0.001661 |
|
Target: 5'- gUGUCCUCCAAGAUUUUCCAUGCACUCa -3' miRNA: 3'- -ACAGGAGGUUCUAAAAGGUACGUGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home