miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5884 3' -55 NC_001806.1 + 27781 0.67 0.921657
Target:  5'- uGGgCCC--CCAaaUCGGGGGCCGGG-CCg -3'
miRNA:   3'- -CCaGGGcaGGU--AGUUCCUGGCCUaGG- -5'
5884 3' -55 NC_001806.1 + 48254 0.67 0.916059
Target:  5'- gGGUCUa--CCAUCGAGGGCCugcucGAUCUc -3'
miRNA:   3'- -CCAGGgcaGGUAGUUCCUGGc----CUAGG- -5'
5884 3' -55 NC_001806.1 + 12902 0.67 0.916059
Target:  5'- cGUCCCcacgggGUCCuccaaGAGGGCCGaAUCCu -3'
miRNA:   3'- cCAGGG------CAGGuag--UUCCUGGCcUAGG- -5'
5884 3' -55 NC_001806.1 + 89471 0.67 0.915487
Target:  5'- aGGcucgCCCGggCCGgcaugugCAAGGGCCuuguuugucuggcGGAUCCg -3'
miRNA:   3'- -CCa---GGGCa-GGUa------GUUCCUGG-------------CCUAGG- -5'
5884 3' -55 NC_001806.1 + 4728 0.68 0.91023
Target:  5'- -cUCCCGUUCG-CGGccccGGGCCGGggCCc -3'
miRNA:   3'- ccAGGGCAGGUaGUU----CCUGGCCuaGG- -5'
5884 3' -55 NC_001806.1 + 62492 0.68 0.91023
Target:  5'- gGGUCCCGUCCGccuUCuccGuGACauacaGGGUCa -3'
miRNA:   3'- -CCAGGGCAGGU---AGuu-C-CUGg----CCUAGg -5'
5884 3' -55 NC_001806.1 + 132571 0.68 0.904169
Target:  5'- cGUCCCGUacuuugCCGUCcuGGGGuuuCCGGGUUg -3'
miRNA:   3'- cCAGGGCA------GGUAG--UUCCu--GGCCUAGg -5'
5884 3' -55 NC_001806.1 + 64976 0.68 0.904169
Target:  5'- gGGUCCCGgggcaaaCAUcCAGGGGCgCGGuGUCa -3'
miRNA:   3'- -CCAGGGCag-----GUA-GUUCCUG-GCC-UAGg -5'
5884 3' -55 NC_001806.1 + 62222 0.68 0.897881
Target:  5'- uGGUCCguaaGggCCGUCAgagcgggggagAGGGCUGGggCCg -3'
miRNA:   3'- -CCAGGg---Ca-GGUAGU-----------UCCUGGCCuaGG- -5'
5884 3' -55 NC_001806.1 + 91900 0.68 0.897881
Target:  5'- cGGUCCCcacggCCAUgGGGcGGCUGGAgaCCa -3'
miRNA:   3'- -CCAGGGca---GGUAgUUC-CUGGCCUa-GG- -5'
5884 3' -55 NC_001806.1 + 52066 0.68 0.897881
Target:  5'- cGUUCgCGcgCCAUCu-GGACCgGGGUCCc -3'
miRNA:   3'- cCAGG-GCa-GGUAGuuCCUGG-CCUAGG- -5'
5884 3' -55 NC_001806.1 + 134656 0.68 0.897881
Target:  5'- uGGUCCuCGUuggCCGUC-AGGACCGccaCCg -3'
miRNA:   3'- -CCAGG-GCA---GGUAGuUCCUGGCcuaGG- -5'
5884 3' -55 NC_001806.1 + 5857 0.68 0.891368
Target:  5'- cGGUCCCGcCCGcCGGacGCCGGGaCCa -3'
miRNA:   3'- -CCAGGGCaGGUaGUUccUGGCCUaGG- -5'
5884 3' -55 NC_001806.1 + 111376 0.68 0.891368
Target:  5'- cGUCCCcggGUCUGUUggGGACacuGGGUUCu -3'
miRNA:   3'- cCAGGG---CAGGUAGuuCCUGg--CCUAGG- -5'
5884 3' -55 NC_001806.1 + 61466 0.68 0.891368
Target:  5'- ---gCUGUCCGUCGgcgccuGGGAUCGGAuaaaUCCg -3'
miRNA:   3'- ccagGGCAGGUAGU------UCCUGGCCU----AGG- -5'
5884 3' -55 NC_001806.1 + 49471 0.69 0.863135
Target:  5'- gGGUCCCGUCgacgcgcgggcUAUUuuGGGgCGGGUCg -3'
miRNA:   3'- -CCAGGGCAG-----------GUAGuuCCUgGCCUAGg -5'
5884 3' -55 NC_001806.1 + 42644 0.69 0.855556
Target:  5'- cGUCgCGUCCGgugCGGGGGCUGGcgUUg -3'
miRNA:   3'- cCAGgGCAGGUa--GUUCCUGGCCuaGG- -5'
5884 3' -55 NC_001806.1 + 41537 0.69 0.855556
Target:  5'- --gCCUGUCCcgUggGGACCauGGAuaUCCg -3'
miRNA:   3'- ccaGGGCAGGuaGuuCCUGG--CCU--AGG- -5'
5884 3' -55 NC_001806.1 + 20088 0.7 0.831662
Target:  5'- -cUCCCGUCguUCGuGG-CCGGcgCCg -3'
miRNA:   3'- ccAGGGCAGguAGUuCCuGGCCuaGG- -5'
5884 3' -55 NC_001806.1 + 88357 0.7 0.831662
Target:  5'- uGUCCCGaaggCCAUCGGGGccGCCGGcugggCUa -3'
miRNA:   3'- cCAGGGCa---GGUAGUUCC--UGGCCua---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.