miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5884 5' -60.5 NC_001806.1 + 6072 0.67 0.660676
Target:  5'- -cGGCCCcgggggcGGGCCCGgGcGGcGGGGGGc -3'
miRNA:   3'- caCCGGG-------UCUGGGCgCuCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 83780 0.67 0.657696
Target:  5'- -gGGCCCucaucggaaccuuGGCCUcCGGGGgcGAGGAg -3'
miRNA:   3'- caCCGGGu------------CUGGGcGCUCCauCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 108962 0.67 0.650736
Target:  5'- -cGGCCUacgagccGGACUagCGCGGGGaAGGGGGa -3'
miRNA:   3'- caCCGGG-------UCUGG--GCGCUCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 29625 0.67 0.641779
Target:  5'- -cGGCaaGGACCCuggGgGAGGaGGAGGAg -3'
miRNA:   3'- caCCGggUCUGGG---CgCUCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 4343 0.67 0.638791
Target:  5'- -gGGCCCGGcggcgcucgaugcgGCCCGCGgAGGccgcGGGGGu -3'
miRNA:   3'- caCCGGGUC--------------UGGGCGC-UCCau--CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 41229 0.67 0.631819
Target:  5'- aGUGGCCCAgGGCCuCGUGGagccGGcgaaAGGGGAc -3'
miRNA:   3'- -CACCGGGU-CUGG-GCGCU----CCa---UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 51030 0.67 0.631819
Target:  5'- -gGGUCCguguuGGGCCCGCGGGuccgcGUGGuGGAc -3'
miRNA:   3'- caCCGGG-----UCUGGGCGCUC-----CAUCuCCU- -5'
5884 5' -60.5 NC_001806.1 + 132690 0.67 0.631819
Target:  5'- -gGGCCU-GGCCCGC--GGUGGGGGc -3'
miRNA:   3'- caCCGGGuCUGGGCGcuCCAUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 30843 0.67 0.627835
Target:  5'- -cGGCCCccgcgcugcuucuGGgCCGCGGGGgccGAGGAa -3'
miRNA:   3'- caCCGGGu------------CUgGGCGCUCCau-CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 118879 0.67 0.621859
Target:  5'- --cGCCUAcguGCCCGCGGaugcGGUGGGGGAg -3'
miRNA:   3'- cacCGGGUc--UGGGCGCU----CCAUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 151545 0.67 0.621859
Target:  5'- -gGGCCCGGGCggCCGgGGGcGgcGGGGGc -3'
miRNA:   3'- caCCGGGUCUG--GGCgCUC-CauCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 49101 0.68 0.582164
Target:  5'- -cGGCUCGcGaACCCGCGGGGcgcaGGAGGc -3'
miRNA:   3'- caCCGGGU-C-UGGGCGCUCCa---UCUCCu -5'
5884 5' -60.5 NC_001806.1 + 95424 0.68 0.582164
Target:  5'- cGUcGCCgCGGGCCCGgGGGGcAGGGGc -3'
miRNA:   3'- -CAcCGG-GUCUGGGCgCUCCaUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 74072 0.68 0.572309
Target:  5'- -cGGaCCCAGGCCCGUcGGGcgaucGAGGGc -3'
miRNA:   3'- caCC-GGGUCUGGGCGcUCCau---CUCCU- -5'
5884 5' -60.5 NC_001806.1 + 19211 0.68 0.562494
Target:  5'- -aGGuuuaCCCGGGCCCGCuuGGGUcguGGGGGAa -3'
miRNA:   3'- caCC----GGGUCUGGGCGc-UCCA---UCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 91981 0.69 0.552726
Target:  5'- -aGGUCguGGaCCGCGAGGUGGAGc- -3'
miRNA:   3'- caCCGGguCUgGGCGCUCCAUCUCcu -5'
5884 5' -60.5 NC_001806.1 + 89183 0.69 0.548832
Target:  5'- uUGGCCCGGucggcuucuguugcGuCCCgacugggGCGAGGUAGGGGu -3'
miRNA:   3'- cACCGGGUC--------------U-GGG-------CGCUCCAUCUCCu -5'
5884 5' -60.5 NC_001806.1 + 94801 0.69 0.543008
Target:  5'- cUGGCCCGGACgCG-GGGGgcGAcGGGc -3'
miRNA:   3'- cACCGGGUCUGgGCgCUCCauCU-CCU- -5'
5884 5' -60.5 NC_001806.1 + 65687 0.69 0.53624
Target:  5'- -cGGCCUccugucccccaaccgGGGCCCGCGcuucgacGGG-AGAGGAu -3'
miRNA:   3'- caCCGGG---------------UCUGGGCGC-------UCCaUCUCCU- -5'
5884 5' -60.5 NC_001806.1 + 2791 0.69 0.52375
Target:  5'- -cGGCCCgGGGCgCCGCGGgcuGGgcGGGGGc -3'
miRNA:   3'- caCCGGG-UCUG-GGCGCU---CCauCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.