miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5893 5' -59.1 NC_001806.1 + 91007 0.67 0.716993
Target:  5'- --gCGGGCGCGaCGGcggCGGcAAGGGCGc -3'
miRNA:   3'- aagGUCUGCGC-GCCa--GUC-UUCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 108972 0.67 0.707124
Target:  5'- -gCCGGACuaGCGCGG--GGAAGGGgGa -3'
miRNA:   3'- aaGGUCUG--CGCGCCagUCUUCCCgCa -5'
5893 5' -59.1 NC_001806.1 + 10686 0.67 0.707124
Target:  5'- -cCCGGuCGCagauGgGGcCGGggGGGCGUa -3'
miRNA:   3'- aaGGUCuGCG----CgCCaGUCuuCCCGCA- -5'
5893 5' -59.1 NC_001806.1 + 76239 0.67 0.706133
Target:  5'- cUCCGggccGACGCGCGGcgcgcgaUCGGAAGcguGGCGc -3'
miRNA:   3'- aAGGU----CUGCGCGCC-------AGUCUUC---CCGCa -5'
5893 5' -59.1 NC_001806.1 + 9209 0.67 0.706133
Target:  5'- -gCgAGG-GCGCGGUCGacguggcGAGGGGCGg -3'
miRNA:   3'- aaGgUCUgCGCGCCAGU-------CUUCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 17778 0.67 0.697192
Target:  5'- -cCCAGACGCGUGgGUgGGAGaaccguGGGcCGUg -3'
miRNA:   3'- aaGGUCUGCGCGC-CAgUCUU------CCC-GCA- -5'
5893 5' -59.1 NC_001806.1 + 52568 0.67 0.697192
Target:  5'- -cCCGGACGacauggccaGCGGccCGGggGGGCa- -3'
miRNA:   3'- aaGGUCUGCg--------CGCCa-GUCuuCCCGca -5'
5893 5' -59.1 NC_001806.1 + 88544 0.67 0.687207
Target:  5'- cUUCGGACGUagacGCGGUaaaaCAGAgcGGGGCGc -3'
miRNA:   3'- aAGGUCUGCG----CGCCA----GUCU--UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 33116 0.67 0.686206
Target:  5'- gUCCGGACGgggcccggaccgcCGCGGUCGGGGgccccucgucccGGGcCGUa -3'
miRNA:   3'- aAGGUCUGC-------------GCGCCAGUCUU------------CCC-GCA- -5'
5893 5' -59.1 NC_001806.1 + 22282 0.68 0.667111
Target:  5'- cUCCAGaacccGCGCGUGGUCcccGGGGaCGUg -3'
miRNA:   3'- aAGGUC-----UGCGCGCCAGucuUCCC-GCA- -5'
5893 5' -59.1 NC_001806.1 + 99572 0.68 0.666103
Target:  5'- aUCCGGugGCggcgggggggaacGCGGgcuccgucggUAGAGGGGCGc -3'
miRNA:   3'- aAGGUCugCG-------------CGCCa---------GUCUUCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 151176 0.68 0.657017
Target:  5'- cUCCGcgguGACGCGCaGG-CGGA-GGGCGa -3'
miRNA:   3'- aAGGU----CUGCGCG-CCaGUCUuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 52540 0.68 0.636779
Target:  5'- -gCCGGACGaCGUGGUCcGcGGGGCc- -3'
miRNA:   3'- aaGGUCUGC-GCGCCAGuCuUCCCGca -5'
5893 5' -59.1 NC_001806.1 + 10364 0.68 0.626651
Target:  5'- cUUCGGGgGCGCuGGgccaagaccUCGGggGGGCGg -3'
miRNA:   3'- aAGGUCUgCGCG-CC---------AGUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 119486 0.68 0.623613
Target:  5'- -aCCGGGCGUGCGGccuguggcguugcaUCGGGgcuacgccAGGGCGc -3'
miRNA:   3'- aaGGUCUGCGCGCC--------------AGUCU--------UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 2832 0.69 0.606414
Target:  5'- -cCCGGGgGCGUGG--AGggGGGCGc -3'
miRNA:   3'- aaGGUCUgCGCGCCagUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 85748 0.69 0.606414
Target:  5'- gUCCGGAgcCGCGCGGcCAcgucguccGggGGGUGc -3'
miRNA:   3'- aAGGUCU--GCGCGCCaGU--------CuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 132168 0.69 0.606414
Target:  5'- aUCCcGACGCGCGGcUGGcguGGGCGc -3'
miRNA:   3'- aAGGuCUGCGCGCCaGUCuu-CCCGCa -5'
5893 5' -59.1 NC_001806.1 + 120307 0.69 0.593297
Target:  5'- gUCCuggcacaccuggggGGACgGgGCGGUCGGggGcGGCGg -3'
miRNA:   3'- aAGG--------------UCUG-CgCGCCAGUCuuC-CCGCa -5'
5893 5' -59.1 NC_001806.1 + 13163 0.69 0.556269
Target:  5'- ---gGGAUGCGCaG-CGGGAGGGCGUa -3'
miRNA:   3'- aaggUCUGCGCGcCaGUCUUCCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.