miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5896 5' -56.2 NC_001806.1 + 135078 0.66 0.89228
Target:  5'- cGCGCcGGGCcgGaaaucggcgCCGACCGGGg- -3'
miRNA:   3'- aUGCGaCCCGuaCaa-------GGUUGGUCCgc -5'
5896 5' -56.2 NC_001806.1 + 143111 0.66 0.89228
Target:  5'- gACGCUggGGGCGUGgcugCCGggagggGCCgcggauGGGCGg -3'
miRNA:   3'- aUGCGA--CCCGUACaa--GGU------UGG------UCCGC- -5'
5896 5' -56.2 NC_001806.1 + 122717 0.66 0.89228
Target:  5'- uUACGCUGaGGCAccacgUCCG-CCGGcGCGc -3'
miRNA:   3'- -AUGCGAC-CCGUaca--AGGUuGGUC-CGC- -5'
5896 5' -56.2 NC_001806.1 + 116271 0.66 0.89228
Target:  5'- cACGUUGGGguUGUUgCuggcguACCgaAGGCGc -3'
miRNA:   3'- aUGCGACCCguACAAgGu-----UGG--UCCGC- -5'
5896 5' -56.2 NC_001806.1 + 81341 0.66 0.885404
Target:  5'- aACGC-GGGCcg----CAACCAGGCGg -3'
miRNA:   3'- aUGCGaCCCGuacaagGUUGGUCCGC- -5'
5896 5' -56.2 NC_001806.1 + 19077 0.66 0.883296
Target:  5'- aGCGCcguagcauugcauuUGGGCuugGggCCGACgGGGUGg -3'
miRNA:   3'- aUGCG--------------ACCCGua-CaaGGUUGgUCCGC- -5'
5896 5' -56.2 NC_001806.1 + 148188 0.66 0.878298
Target:  5'- gGCGCgGGGCG---UCCGGCgggGGGCGg -3'
miRNA:   3'- aUGCGaCCCGUacaAGGUUGg--UCCGC- -5'
5896 5' -56.2 NC_001806.1 + 98657 0.66 0.870967
Target:  5'- -cCGUgucGGGCGUGUccuccuucaugUCCAACCccuuugGGGCGc -3'
miRNA:   3'- auGCGa--CCCGUACA-----------AGGUUGG------UCCGC- -5'
5896 5' -56.2 NC_001806.1 + 3137 0.66 0.870967
Target:  5'- aGCGCgGGGCccaGggCCccggcGACCAGGCu -3'
miRNA:   3'- aUGCGaCCCGua-CaaGG-----UUGGUCCGc -5'
5896 5' -56.2 NC_001806.1 + 36809 0.66 0.863416
Target:  5'- aUACGUUGGGUuaGUUCCcuccgcccacCCAGGCc -3'
miRNA:   3'- -AUGCGACCCGuaCAAGGuu--------GGUCCGc -5'
5896 5' -56.2 NC_001806.1 + 27002 0.66 0.863416
Target:  5'- -cCGaCcGGGCucgGUUCCGgcGCCGGGUGg -3'
miRNA:   3'- auGC-GaCCCGua-CAAGGU--UGGUCCGC- -5'
5896 5' -56.2 NC_001806.1 + 79865 0.66 0.860336
Target:  5'- -cCGCUcGGGCcccaggccgCCGGCCAGGCu -3'
miRNA:   3'- auGCGA-CCCGuacaa----GGUUGGUCCGc -5'
5896 5' -56.2 NC_001806.1 + 59615 0.66 0.855652
Target:  5'- aGCGCcgGGGCcuUGgggccCCGGCCGGGUa -3'
miRNA:   3'- aUGCGa-CCCGu-ACaa---GGUUGGUCCGc -5'
5896 5' -56.2 NC_001806.1 + 32111 0.66 0.854864
Target:  5'- gACGaggggaUGGGCGUGUUgguuaCCAACCcacacccAGGCa -3'
miRNA:   3'- aUGCg-----ACCCGUACAA-----GGUUGG-------UCCGc -5'
5896 5' -56.2 NC_001806.1 + 86087 0.67 0.847681
Target:  5'- cGCGgaGGGCGg---CCAGCCGcGCGa -3'
miRNA:   3'- aUGCgaCCCGUacaaGGUUGGUcCGC- -5'
5896 5' -56.2 NC_001806.1 + 141383 0.67 0.839509
Target:  5'- gGCauuCUGGGCGUGUgugccCCAgagcauaaacACCAGGCc -3'
miRNA:   3'- aUGc--GACCCGUACAa----GGU----------UGGUCCGc -5'
5896 5' -56.2 NC_001806.1 + 88952 0.67 0.831144
Target:  5'- -cCGCcgGGGCGUGgUCCAcgccGCCccacAGGCGc -3'
miRNA:   3'- auGCGa-CCCGUACaAGGU----UGG----UCCGC- -5'
5896 5' -56.2 NC_001806.1 + 71341 0.67 0.831144
Target:  5'- gAgGCcuaUGGGCAcGgcCCAcGCCAGGCGg -3'
miRNA:   3'- aUgCG---ACCCGUaCaaGGU-UGGUCCGC- -5'
5896 5' -56.2 NC_001806.1 + 142163 0.67 0.813865
Target:  5'- -uCGCgGGGUggGgUCCGACguGGCGa -3'
miRNA:   3'- auGCGaCCCGuaCaAGGUUGguCCGC- -5'
5896 5' -56.2 NC_001806.1 + 49721 0.68 0.793163
Target:  5'- gUGCGCUccgcccuagcccugGGGCA---UCCGGCCGGGUu -3'
miRNA:   3'- -AUGCGA--------------CCCGUacaAGGUUGGUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.