miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5903 3' -52.5 NC_001806.1 + 22188 0.66 0.98497
Target:  5'- -gGCCGUGUGgGCGCccgagcuGGgcGACGCc -3'
miRNA:   3'- agCGGCAUAUgCGCGc------UCuuCUGUGu -5'
5903 3' -52.5 NC_001806.1 + 115129 0.66 0.98479
Target:  5'- gUGCCGcg-GCGCGCaGGGAuggaccacggccaGGACGCc -3'
miRNA:   3'- aGCGGCauaUGCGCG-CUCU-------------UCUGUGu -5'
5903 3' -52.5 NC_001806.1 + 51264 0.66 0.983866
Target:  5'- gCGCCGg--ACGCGCGgcgcgagcucccugcGGcuGGCGCGg -3'
miRNA:   3'- aGCGGCauaUGCGCGC---------------UCuuCUGUGU- -5'
5903 3' -52.5 NC_001806.1 + 3203 0.66 0.981054
Target:  5'- cCGCCGgccACGCGC-AGGuccccgcgcAGGCGCAu -3'
miRNA:   3'- aGCGGCauaUGCGCGcUCU---------UCUGUGU- -5'
5903 3' -52.5 NC_001806.1 + 45294 0.66 0.981054
Target:  5'- aCGCgGgcc-CGCGCGGGGAGcCGCc -3'
miRNA:   3'- aGCGgCauauGCGCGCUCUUCuGUGu -5'
5903 3' -52.5 NC_001806.1 + 1754 0.66 0.978831
Target:  5'- -gGCgGUAcuCGCGCGGGGacauGGGCACc -3'
miRNA:   3'- agCGgCAUauGCGCGCUCU----UCUGUGu -5'
5903 3' -52.5 NC_001806.1 + 64559 0.66 0.978128
Target:  5'- -gGCaUGUAUGCGUucgGCGGGAccggaggaacguccAGACACAg -3'
miRNA:   3'- agCG-GCAUAUGCG---CGCUCU--------------UCUGUGU- -5'
5903 3' -52.5 NC_001806.1 + 47608 0.66 0.976421
Target:  5'- aCGCCGagcUACggGCGCGGGAGGAgaGCu -3'
miRNA:   3'- aGCGGCau-AUG--CGCGCUCUUCUg-UGu -5'
5903 3' -52.5 NC_001806.1 + 15743 0.66 0.976421
Target:  5'- gCGCgGgagcgGUA-GCGCGAGGugAGGCGCGa -3'
miRNA:   3'- aGCGgCa----UAUgCGCGCUCU--UCUGUGU- -5'
5903 3' -52.5 NC_001806.1 + 76671 0.66 0.976421
Target:  5'- aCGCUGgaccagGCGCGCucggcgGAGGAGAuCGCGg -3'
miRNA:   3'- aGCGGCaua---UGCGCG------CUCUUCU-GUGU- -5'
5903 3' -52.5 NC_001806.1 + 99730 0.67 0.973815
Target:  5'- gCGCUGUGUG-GUGgGGGgcGAUACAc -3'
miRNA:   3'- aGCGGCAUAUgCGCgCUCuuCUGUGU- -5'
5903 3' -52.5 NC_001806.1 + 63917 0.67 0.973815
Target:  5'- aUGCCcccguUGCGgGCGAGGAuGGCACu -3'
miRNA:   3'- aGCGGcau--AUGCgCGCUCUU-CUGUGu -5'
5903 3' -52.5 NC_001806.1 + 127185 0.67 0.973815
Target:  5'- gUGCCcccggAUAUGCGCGGGGuuACGCGg -3'
miRNA:   3'- aGCGGca---UAUGCGCGCUCUucUGUGU- -5'
5903 3' -52.5 NC_001806.1 + 67526 0.67 0.973544
Target:  5'- -gGCCGU---CGCgGCGAGAgaucgggGGGCGCAg -3'
miRNA:   3'- agCGGCAuauGCG-CGCUCU-------UCUGUGU- -5'
5903 3' -52.5 NC_001806.1 + 97748 0.67 0.971007
Target:  5'- cUCGCgGagcUGUACGUGCGGGA--ACACc -3'
miRNA:   3'- -AGCGgC---AUAUGCGCGCUCUucUGUGu -5'
5903 3' -52.5 NC_001806.1 + 65098 0.67 0.971007
Target:  5'- cCGCCGgacACGUcCGAGGAGGCGu- -3'
miRNA:   3'- aGCGGCauaUGCGcGCUCUUCUGUgu -5'
5903 3' -52.5 NC_001806.1 + 24654 0.67 0.971007
Target:  5'- -gGcCCGUGUACGUGgCGcuGGGGCGCGa -3'
miRNA:   3'- agC-GGCAUAUGCGC-GCucUUCUGUGU- -5'
5903 3' -52.5 NC_001806.1 + 136113 0.67 0.971007
Target:  5'- -aGCCGgcagacGUGCGCGUGuucccggaGGGAGugACAc -3'
miRNA:   3'- agCGGCa-----UAUGCGCGC--------UCUUCugUGU- -5'
5903 3' -52.5 NC_001806.1 + 111764 0.67 0.967989
Target:  5'- -aGCC-UGUACGaCGCGAGuucGACGCc -3'
miRNA:   3'- agCGGcAUAUGC-GCGCUCuu-CUGUGu -5'
5903 3' -52.5 NC_001806.1 + 95483 0.67 0.967989
Target:  5'- -gGCCGcggACGUGCGGGAGcGACGg- -3'
miRNA:   3'- agCGGCauaUGCGCGCUCUU-CUGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.