miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5903 5' -62.1 NC_001806.1 + 80324 0.66 0.683069
Target:  5'- uCUGCGCGCCCCcGGGggcAUUUGAc-- -3'
miRNA:   3'- cGGCGCGCGGGGaCCCa--UGAGCUccu -5'
5903 5' -62.1 NC_001806.1 + 4975 0.66 0.683069
Target:  5'- cGCCGgGCGUCgUCgagucguggGGGUGgUCGGGGu -3'
miRNA:   3'- -CGGCgCGCGG-GGa--------CCCAUgAGCUCCu -5'
5903 5' -62.1 NC_001806.1 + 71065 0.66 0.683069
Target:  5'- aGCCGuCGCGaCCUaGGGgcCUgGGGGGa -3'
miRNA:   3'- -CGGC-GCGCgGGGaCCCauGAgCUCCU- -5'
5903 5' -62.1 NC_001806.1 + 50480 0.66 0.683069
Target:  5'- uUCGCGCccuGCCCCUGGGaagccccGCggucgUGGGGGc -3'
miRNA:   3'- cGGCGCG---CGGGGACCCa------UGa----GCUCCU- -5'
5903 5' -62.1 NC_001806.1 + 74017 0.66 0.673377
Target:  5'- uCCGCGCccacccCCCCUGGGccC-CGAGGc -3'
miRNA:   3'- cGGCGCGc-----GGGGACCCauGaGCUCCu -5'
5903 5' -62.1 NC_001806.1 + 24344 0.66 0.673377
Target:  5'- gGCCGCGUGUucggCCCggGGGUcuucGCgcgCGuGGAg -3'
miRNA:   3'- -CGGCGCGCG----GGGa-CCCA----UGa--GCuCCU- -5'
5903 5' -62.1 NC_001806.1 + 64865 0.66 0.673377
Target:  5'- uCCGCGCGUCCC-GGGccACggCG-GGAu -3'
miRNA:   3'- cGGCGCGCGGGGaCCCa-UGa-GCuCCU- -5'
5903 5' -62.1 NC_001806.1 + 371 0.66 0.673377
Target:  5'- cGCgCGCGCGCCCgCgGGGgGCcCGGGc- -3'
miRNA:   3'- -CG-GCGCGCGGG-GaCCCaUGaGCUCcu -5'
5903 5' -62.1 NC_001806.1 + 152081 0.66 0.673377
Target:  5'- cGCgCGCGCGCCCgCgGGGgGCcCGGGc- -3'
miRNA:   3'- -CG-GCGCGCGGG-GaCCCaUGaGCUCcu -5'
5903 5' -62.1 NC_001806.1 + 85754 0.66 0.672406
Target:  5'- aGCCGCGCgGCCacgucguCCgggGGGUGCcacacuUCG-GGAa -3'
miRNA:   3'- -CGGCGCG-CGG-------GGa--CCCAUG------AGCuCCU- -5'
5903 5' -62.1 NC_001806.1 + 78505 0.66 0.664629
Target:  5'- aCCGCGCGUCUggaauCUGGGcagacgcugagcccCUCGGGGGg -3'
miRNA:   3'- cGGCGCGCGGG-----GACCCau------------GAGCUCCU- -5'
5903 5' -62.1 NC_001806.1 + 148430 0.66 0.663655
Target:  5'- aCCGUGUGCCCCcccaGGGUcagguACcgCGGGGc -3'
miRNA:   3'- cGGCGCGCGGGGa---CCCA-----UGa-GCUCCu -5'
5903 5' -62.1 NC_001806.1 + 137571 0.66 0.663655
Target:  5'- cGaaGCGCGCCCUggccgccuccgGGGg---CGAGGAg -3'
miRNA:   3'- -CggCGCGCGGGGa----------CCCaugaGCUCCU- -5'
5903 5' -62.1 NC_001806.1 + 19516 0.66 0.663655
Target:  5'- -gCGCGUGCCCa-GGGg---CGGGGAu -3'
miRNA:   3'- cgGCGCGCGGGgaCCCaugaGCUCCU- -5'
5903 5' -62.1 NC_001806.1 + 88641 0.66 0.65391
Target:  5'- uGCCGCggaacgacGCGCCCg-GGG-ACUCGcgcAGGGc -3'
miRNA:   3'- -CGGCG--------CGCGGGgaCCCaUGAGC---UCCU- -5'
5903 5' -62.1 NC_001806.1 + 30214 0.66 0.644149
Target:  5'- cCCGCGCGCCCCcgcgcggccgUGGccccGUGCgugCGAGc- -3'
miRNA:   3'- cGGCGCGCGGGG----------ACC----CAUGa--GCUCcu -5'
5903 5' -62.1 NC_001806.1 + 96757 0.66 0.641218
Target:  5'- aGCCGCGCcgcugcccgacccgGCCCgaGGGUcagaACUacacgGAGGGc -3'
miRNA:   3'- -CGGCGCG--------------CGGGgaCCCA----UGAg----CUCCU- -5'
5903 5' -62.1 NC_001806.1 + 9180 0.66 0.634379
Target:  5'- gGCCGUGUaGCCCggGGGUcGCggguguggCGAGGGc -3'
miRNA:   3'- -CGGCGCG-CGGGgaCCCA-UGa-------GCUCCU- -5'
5903 5' -62.1 NC_001806.1 + 119218 0.66 0.634379
Target:  5'- gGCUGCG-GCCCaccuguccaUGGGU-CUgGGGGAa -3'
miRNA:   3'- -CGGCGCgCGGGg--------ACCCAuGAgCUCCU- -5'
5903 5' -62.1 NC_001806.1 + 107939 0.66 0.634379
Target:  5'- aCCaGCGCGa-CCUGGG-GCUCGuGGGg -3'
miRNA:   3'- cGG-CGCGCggGGACCCaUGAGCuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.