miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5906 5' -56.5 NC_001806.1 + 22551 0.66 0.890086
Target:  5'- cGAGAACGcggcGCugACGGGGGccgcgGGGa--- -3'
miRNA:   3'- -CUCUUGU----UGugUGCCCCCa----CCCgcau -5'
5906 5' -56.5 NC_001806.1 + 105129 0.66 0.890086
Target:  5'- uGGGGACAGCuuuCGGGGGcGGcCGUGc -3'
miRNA:   3'- -CUCUUGUUGuguGCCCCCaCCcGCAU- -5'
5906 5' -56.5 NC_001806.1 + 2748 0.66 0.890086
Target:  5'- cGGcGCGACACggccACGGGGcGcGGGCGg- -3'
miRNA:   3'- cUCuUGUUGUG----UGCCCC-CaCCCGCau -5'
5906 5' -56.5 NC_001806.1 + 151431 0.66 0.890086
Target:  5'- cGGGGGCc-CACcgGCGGGGGgcggcggcgGGGCGg- -3'
miRNA:   3'- -CUCUUGuuGUG--UGCCCCCa--------CCCGCau -5'
5906 5' -56.5 NC_001806.1 + 37816 0.66 0.883185
Target:  5'- gGGGGGCAAuCGCcagcgucauuaGCGGGGG-GGGUGc- -3'
miRNA:   3'- -CUCUUGUU-GUG-----------UGCCCCCaCCCGCau -5'
5906 5' -56.5 NC_001806.1 + 95267 0.66 0.883185
Target:  5'- gGAGGcgcuGCGucgcgugcuggcGCGCAUGGGGGcgggGGGCGc- -3'
miRNA:   3'- -CUCU----UGU------------UGUGUGCCCCCa---CCCGCau -5'
5906 5' -56.5 NC_001806.1 + 148182 0.66 0.876059
Target:  5'- uGGGGgGGCGCggggcguccgGCGGGGGgcGGGCGg- -3'
miRNA:   3'- cUCUUgUUGUG----------UGCCCCCa-CCCGCau -5'
5906 5' -56.5 NC_001806.1 + 25645 0.66 0.876059
Target:  5'- gGAGGGCuGGgGCugGGGaGG-GGGCGg- -3'
miRNA:   3'- -CUCUUG-UUgUGugCCC-CCaCCCGCau -5'
5906 5' -56.5 NC_001806.1 + 9171 0.66 0.876059
Target:  5'- gGAGAcaACGGCcguguaGCcCGGGGGUcgcGGGUGUGg -3'
miRNA:   3'- -CUCU--UGUUG------UGuGCCCCCA---CCCGCAU- -5'
5906 5' -56.5 NC_001806.1 + 12668 0.66 0.871678
Target:  5'- cGAGGACGGCugGucgucuucccggaugUGGGGGa-GGCGUAu -3'
miRNA:   3'- -CUCUUGUUGugU---------------GCCCCCacCCGCAU- -5'
5906 5' -56.5 NC_001806.1 + 71628 0.66 0.868713
Target:  5'- cGGGGcCAugGUACGGGGGcaUGGGUGg- -3'
miRNA:   3'- -CUCUuGUugUGUGCCCCC--ACCCGCau -5'
5906 5' -56.5 NC_001806.1 + 32450 0.66 0.861153
Target:  5'- aGAGAGCcaggcacaaaAACACAgGcGGGGUGGGaCa-- -3'
miRNA:   3'- -CUCUUG----------UUGUGUgC-CCCCACCC-Gcau -5'
5906 5' -56.5 NC_001806.1 + 41377 0.66 0.853383
Target:  5'- aGGGGGCAu--CACGGGGcccUGGGCGc- -3'
miRNA:   3'- -CUCUUGUuguGUGCCCCc--ACCCGCau -5'
5906 5' -56.5 NC_001806.1 + 99660 0.67 0.845412
Target:  5'- -cGGGCAggcagcugggGCAUACGGGGGaguggGGGCa-- -3'
miRNA:   3'- cuCUUGU----------UGUGUGCCCCCa----CCCGcau -5'
5906 5' -56.5 NC_001806.1 + 33635 0.67 0.845412
Target:  5'- -cGGAUAcccACACggGCGGGGGggGGGUGUc -3'
miRNA:   3'- cuCUUGU---UGUG--UGCCCCCa-CCCGCAu -5'
5906 5' -56.5 NC_001806.1 + 83250 0.67 0.845412
Target:  5'- aAGGGCc-CGCGgGGGGGcGGGCGa- -3'
miRNA:   3'- cUCUUGuuGUGUgCCCCCaCCCGCau -5'
5906 5' -56.5 NC_001806.1 + 100190 0.67 0.828888
Target:  5'- cGAGAACAGCACccCGGGauacugaUGGGCGa- -3'
miRNA:   3'- -CUCUUGUUGUGu-GCCCcc-----ACCCGCau -5'
5906 5' -56.5 NC_001806.1 + 89769 0.67 0.828888
Target:  5'- --uGAUGACGCGCGGGGcGUGGGaGg- -3'
miRNA:   3'- cucUUGUUGUGUGCCCC-CACCCgCau -5'
5906 5' -56.5 NC_001806.1 + 59163 0.67 0.811642
Target:  5'- cGGGuGCGGgACGCGGaGG-GGGCGUAu -3'
miRNA:   3'- -CUCuUGUUgUGUGCCcCCaCCCGCAU- -5'
5906 5' -56.5 NC_001806.1 + 4828 0.67 0.811642
Target:  5'- cGGGGCGGCGaggcCGCGGGGucGGGCGUc -3'
miRNA:   3'- cUCUUGUUGU----GUGCCCCcaCCCGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.