miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5908 3' -60.1 NC_001806.1 + 1682 0.66 0.751767
Target:  5'- gCGCGCcggGCGCcauGGCgucGGUGGUccccgAGGCCGc -3'
miRNA:   3'- -GCGCG---CGCG---CCGaa-CUAUCG-----UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 38072 0.66 0.748945
Target:  5'- cCGcCGCGgGCaGGCUgggcuuUGGUcgguggggguuggaGGCGGGCCa -3'
miRNA:   3'- -GC-GCGCgCG-CCGA------ACUA--------------UCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 3090 0.66 0.742327
Target:  5'- cCGCgGCG-GCGGCggccgcgGAgcucGGCAGGCgCGg -3'
miRNA:   3'- -GCG-CGCgCGCCGaa-----CUa---UCGUCCG-GC- -5'
5908 3' -60.1 NC_001806.1 + 112706 0.66 0.739477
Target:  5'- gCGUGCGCGCGGaucUGGUguccaucggcgagaAGCuGGUCu -3'
miRNA:   3'- -GCGCGCGCGCCga-ACUA--------------UCGuCCGGc -5'
5908 3' -60.1 NC_001806.1 + 53855 0.66 0.732795
Target:  5'- aCGCGUGCGaCGGCggccagcUGuuUGGCAG-CCGc -3'
miRNA:   3'- -GCGCGCGC-GCCGa------ACu-AUCGUCcGGC- -5'
5908 3' -60.1 NC_001806.1 + 69141 0.66 0.732795
Target:  5'- gCGCGCGUGCGGacgGAcgu--GGCCGu -3'
miRNA:   3'- -GCGCGCGCGCCgaaCUaucguCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 76742 0.66 0.732795
Target:  5'- --gGCGCGCGaGCUcGAcguGCAGGCgGu -3'
miRNA:   3'- gcgCGCGCGC-CGAaCUau-CGUCCGgC- -5'
5908 3' -60.1 NC_001806.1 + 91010 0.66 0.732795
Target:  5'- gGCGCGacggcgGCGGCaaGGgcgcGGCGGGCgGg -3'
miRNA:   3'- gCGCGCg-----CGCCGaaCUa---UCGUCCGgC- -5'
5908 3' -60.1 NC_001806.1 + 126125 0.66 0.732795
Target:  5'- gGC-CGCGCGGaCgacGGcGGCgAGGCCGg -3'
miRNA:   3'- gCGcGCGCGCC-Gaa-CUaUCG-UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 122362 0.66 0.732795
Target:  5'- gGCGCGC-UGGCggaaGUGGCGcacGGCCGc -3'
miRNA:   3'- gCGCGCGcGCCGaac-UAUCGU---CCGGC- -5'
5908 3' -60.1 NC_001806.1 + 133197 0.66 0.731837
Target:  5'- aGaCGCGgaUGCGGCUuccggggUGAUcgaggacgcccGGCGGGCCa -3'
miRNA:   3'- gC-GCGC--GCGCCGA-------ACUA-----------UCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 119487 0.66 0.723181
Target:  5'- cCGgGCGUGCGGCcUG-UGGCguugcaucgGGGCUa -3'
miRNA:   3'- -GCgCGCGCGCCGaACuAUCG---------UCCGGc -5'
5908 3' -60.1 NC_001806.1 + 3770 0.66 0.723181
Target:  5'- uGCGCGCggucguaucgGCGGCUcaUGGccacGGC-GGCCGc -3'
miRNA:   3'- gCGCGCG----------CGCCGA--ACUa---UCGuCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 34515 0.66 0.723181
Target:  5'- gGCcCGgGgGGUggGAgcGCGGGCCGg -3'
miRNA:   3'- gCGcGCgCgCCGaaCUauCGUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 142192 0.66 0.722215
Target:  5'- uGgGCG-GCGGCgUGGUGaggggcuucggcuGCAGGCCc -3'
miRNA:   3'- gCgCGCgCGCCGaACUAU-------------CGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 23046 0.66 0.713491
Target:  5'- -cUGCGCGUGGCcggcGGcAGCgAGGCCGc -3'
miRNA:   3'- gcGCGCGCGCCGaa--CUaUCG-UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 79024 0.66 0.713491
Target:  5'- -cCGaCGUGCGGUUUGuUGGCagcgAGGCCa -3'
miRNA:   3'- gcGC-GCGCGCCGAACuAUCG----UCCGGc -5'
5908 3' -60.1 NC_001806.1 + 147648 0.66 0.713491
Target:  5'- gGCGCGCGUccGCgggGcgGGC-GGCCGg -3'
miRNA:   3'- gCGCGCGCGc-CGaa-CuaUCGuCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 37711 0.66 0.713491
Target:  5'- cCGCGCGCuCGGagaugGAgcGCAGGaCCa -3'
miRNA:   3'- -GCGCGCGcGCCgaa--CUauCGUCC-GGc -5'
5908 3' -60.1 NC_001806.1 + 94170 0.66 0.703736
Target:  5'- gCGgGCGCuGCGGCgucgucUGAggccgGGCcuggaggcccAGGCCGg -3'
miRNA:   3'- -GCgCGCG-CGCCGa-----ACUa----UCG----------UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.