miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5908 3' -60.1 NC_001806.1 + 25929 0.85 0.056479
Target:  5'- gCGCGCGCGCGGCgggcgUGggGGCGgGGCCGc -3'
miRNA:   3'- -GCGCGCGCGCCGa----ACuaUCGU-CCGGC- -5'
5908 3' -60.1 NC_001806.1 + 26970 0.83 0.083655
Target:  5'- gGCGCGcCGCGGCUcgUGGgcccgcgAGCGGGCCGa -3'
miRNA:   3'- gCGCGC-GCGCCGA--ACUa------UCGUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 1634 0.78 0.162198
Target:  5'- aGCGCGCGCaGGCggcgUGcgAGUGGGCCu -3'
miRNA:   3'- gCGCGCGCG-CCGa---ACuaUCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 95660 0.77 0.183481
Target:  5'- gGCGCGCGCGcGCUucugcgcccUGAcGGCGGGCgCGg -3'
miRNA:   3'- gCGCGCGCGC-CGA---------ACUaUCGUCCG-GC- -5'
5908 3' -60.1 NC_001806.1 + 128513 0.74 0.315117
Target:  5'- gCGUgGCGUGCGGCaUGGccauGCGGGCCGc -3'
miRNA:   3'- -GCG-CGCGCGCCGaACUau--CGUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 3908 0.74 0.315117
Target:  5'- -uUGCGCGCGGCgcccgaGAUccggaAGCAGGCCu -3'
miRNA:   3'- gcGCGCGCGCCGaa----CUA-----UCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 21919 0.73 0.329431
Target:  5'- gGCcCGCGCGGC--GGUGGCcGGCCGc -3'
miRNA:   3'- gCGcGCGCGCCGaaCUAUCGuCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 29676 0.73 0.336766
Target:  5'- gGCGgGCG-GGCgagGAaagGGCGGGCCGg -3'
miRNA:   3'- gCGCgCGCgCCGaa-CUa--UCGUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 30402 0.73 0.351791
Target:  5'- gGUgGCGCGCGGCUcg--GGgGGGCCGg -3'
miRNA:   3'- gCG-CGCGCGCCGAacuaUCgUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 64152 0.72 0.367285
Target:  5'- uGcCGCGCGUGGCcc---GGCAGGCCa -3'
miRNA:   3'- gC-GCGCGCGCCGaacuaUCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 24685 0.72 0.391392
Target:  5'- gGUGCGCGcCGGCccggcccGGUGGCgcGGGCCGc -3'
miRNA:   3'- gCGCGCGC-GCCGaa-----CUAUCG--UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 134805 0.71 0.416507
Target:  5'- aCGCGCGCGauGC-UGGUGGCGguaaaccgcGGCUGg -3'
miRNA:   3'- -GCGCGCGCgcCGaACUAUCGU---------CCGGC- -5'
5908 3' -60.1 NC_001806.1 + 32229 0.71 0.425094
Target:  5'- aCGCGCacccGCGCGGCca---GGUGGGCCGg -3'
miRNA:   3'- -GCGCG----CGCGCCGaacuaUCGUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 25885 0.71 0.442582
Target:  5'- gCGCGCGCGCGcGCaaaaaaGGCGGGCgGc -3'
miRNA:   3'- -GCGCGCGCGC-CGaacua-UCGUCCGgC- -5'
5908 3' -60.1 NC_001806.1 + 3014 0.71 0.442582
Target:  5'- aGCGCGUcgGCGGCguccGGUGcGCuGGCCGc -3'
miRNA:   3'- gCGCGCG--CGCCGaa--CUAU-CGuCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 368 0.7 0.469554
Target:  5'- gCGCGCGCGCGcGCccgcgGggGGCccGGGCUGc -3'
miRNA:   3'- -GCGCGCGCGC-CGaa---CuaUCG--UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 35876 0.7 0.487064
Target:  5'- gCGCgGCGCGCGGCUcgucUGAUcaugccccauaccGGCgacaGGGCUGu -3'
miRNA:   3'- -GCG-CGCGCGCCGA----ACUA-------------UCG----UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 105016 0.7 0.497341
Target:  5'- aGCGCcccgGCgaGCGGCUUGAccUGGCuaugcuGGCCGc -3'
miRNA:   3'- gCGCG----CG--CGCCGAACU--AUCGu-----CCGGC- -5'
5908 3' -60.1 NC_001806.1 + 34394 0.7 0.497341
Target:  5'- uGgGUGgGCGGC--GGUGGcCGGGCCGg -3'
miRNA:   3'- gCgCGCgCGCCGaaCUAUC-GUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 40592 0.69 0.543237
Target:  5'- gGCGUGCGCGGCgacaaacgccgGAacgucuuuGCAGGCgGg -3'
miRNA:   3'- gCGCGCGCGCCGaa---------CUau------CGUCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.