miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5908 3' -60.1 NC_001806.1 + 91212 0.67 0.693923
Target:  5'- gGCGCGCGCcGCggGAcucguGgGGGCCa -3'
miRNA:   3'- gCGCGCGCGcCGaaCUau---CgUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 108644 0.67 0.693923
Target:  5'- gGUGUGCGUGGCUgcgGAcauGCGcccgcGGCCa -3'
miRNA:   3'- gCGCGCGCGCCGAa--CUau-CGU-----CCGGc -5'
5908 3' -60.1 NC_001806.1 + 147491 0.67 0.693923
Target:  5'- aGCGgG-GCGGCgccgGAgggGGCGGcGCCGc -3'
miRNA:   3'- gCGCgCgCGCCGaa--CUa--UCGUC-CGGC- -5'
5908 3' -60.1 NC_001806.1 + 45302 0.67 0.693923
Target:  5'- cCGCGCGgGgagccgccCGGCgagGAgGGCGGGCgCGa -3'
miRNA:   3'- -GCGCGCgC--------GCCGaa-CUaUCGUCCG-GC- -5'
5908 3' -60.1 NC_001806.1 + 136975 0.67 0.693923
Target:  5'- cCGCGaGCGUGGUgcGGUcauGGCGgcGGCCGg -3'
miRNA:   3'- -GCGCgCGCGCCGaaCUA---UCGU--CCGGC- -5'
5908 3' -60.1 NC_001806.1 + 117753 0.67 0.684061
Target:  5'- -aCGUGCGUGGC---GUGGCGacGGCCGa -3'
miRNA:   3'- gcGCGCGCGCCGaacUAUCGU--CCGGC- -5'
5908 3' -60.1 NC_001806.1 + 4672 0.67 0.684061
Target:  5'- gGCGgGCGCGGCgaca-GGCGGuCCGu -3'
miRNA:   3'- gCGCgCGCGCCGaacuaUCGUCcGGC- -5'
5908 3' -60.1 NC_001806.1 + 93858 0.67 0.684061
Target:  5'- aCGCGC-CGCcgacucccGGCUUGccggucGGCGGGCCc -3'
miRNA:   3'- -GCGCGcGCG--------CCGAACua----UCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 109426 0.67 0.683073
Target:  5'- gGCGCG-GCGGCccgUGAUAaccacauccgugcGCGGGuuGu -3'
miRNA:   3'- gCGCGCgCGCCGa--ACUAU-------------CGUCCggC- -5'
5908 3' -60.1 NC_001806.1 + 50210 0.67 0.674158
Target:  5'- uGCGCGCGCuGCUgGAccGCGacugucgcguGGCCGc -3'
miRNA:   3'- gCGCGCGCGcCGAaCUauCGU----------CCGGC- -5'
5908 3' -60.1 NC_001806.1 + 143116 0.67 0.670187
Target:  5'- uGgGgGCGUGGCUgccggGAggggccgcggaugGGCGGGCCu -3'
miRNA:   3'- gCgCgCGCGCCGAa----CUa------------UCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 148186 0.67 0.664223
Target:  5'- gGgGCGCGgGGCguccggcgGggGGCGGGCgGu -3'
miRNA:   3'- gCgCGCGCgCCGaa------CuaUCGUCCGgC- -5'
5908 3' -60.1 NC_001806.1 + 22546 0.67 0.664223
Target:  5'- gCGCGCGagaaCGCGGCgcUGAcGG-GGGCCGc -3'
miRNA:   3'- -GCGCGC----GCGCCGa-ACUaUCgUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 98606 0.67 0.654263
Target:  5'- gGCGCGCGguCGGCaaGGUGGUgauGGGCa- -3'
miRNA:   3'- gCGCGCGC--GCCGaaCUAUCG---UCCGgc -5'
5908 3' -60.1 NC_001806.1 + 70854 0.67 0.654263
Target:  5'- cCGCG-GCGCGGCcgcggGAcccgAGCccguGGCCGa -3'
miRNA:   3'- -GCGCgCGCGCCGaa---CUa---UCGu---CCGGC- -5'
5908 3' -60.1 NC_001806.1 + 75487 0.67 0.644285
Target:  5'- aCGCGCGCGaccacCGGCgcgcggGAaagccucGCGGGCCa -3'
miRNA:   3'- -GCGCGCGC-----GCCGaa----CUau-----CGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 148003 0.67 0.644285
Target:  5'- gGCGC-CGCGGCUcgcGAcUGGCGGgaGCCGc -3'
miRNA:   3'- gCGCGcGCGCCGAa--CU-AUCGUC--CGGC- -5'
5908 3' -60.1 NC_001806.1 + 2636 0.67 0.644285
Target:  5'- gGCGCGCGgGGagc---AGUAGGCCu -3'
miRNA:   3'- gCGCGCGCgCCgaacuaUCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 50547 0.67 0.640292
Target:  5'- aGCGCGC-CGGCUgcucgccaacAGCGGGCUc -3'
miRNA:   3'- gCGCGCGcGCCGAacua------UCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 33736 0.68 0.634299
Target:  5'- uGCGCGCGcCGGCUcugcGGUgucGGCGgcGGCUGc -3'
miRNA:   3'- gCGCGCGC-GCCGAa---CUA---UCGU--CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.