miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5908 3' -60.1 NC_001806.1 + 368 0.7 0.469554
Target:  5'- gCGCGCGCGCGcGCccgcgGggGGCccGGGCUGc -3'
miRNA:   3'- -GCGCGCGCGC-CGaa---CuaUCG--UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 1634 0.78 0.162198
Target:  5'- aGCGCGCGCaGGCggcgUGcgAGUGGGCCu -3'
miRNA:   3'- gCGCGCGCG-CCGa---ACuaUCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 1682 0.66 0.751767
Target:  5'- gCGCGCcggGCGCcauGGCgucGGUGGUccccgAGGCCGc -3'
miRNA:   3'- -GCGCG---CGCG---CCGaa-CUAUCG-----UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 1871 0.69 0.561798
Target:  5'- gCGCGUGCGCGGCcuccacGCgcgcgaagacccccGGGCCGa -3'
miRNA:   3'- -GCGCGCGCGCCGaacuauCG--------------UCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 2502 0.69 0.574596
Target:  5'- cCGcCGCaCGCGGCcUGGgcggcgggGGCGGGCCc -3'
miRNA:   3'- -GC-GCGcGCGCCGaACUa-------UCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 2636 0.67 0.644285
Target:  5'- gGCGCGCGgGGagc---AGUAGGCCu -3'
miRNA:   3'- gCGCGCGCgCCgaacuaUCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 2781 0.68 0.60436
Target:  5'- uGCGC-CGCGGCggcccgGGgcgccGCGGGCUGg -3'
miRNA:   3'- gCGCGcGCGCCGaa----CUau---CGUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 3014 0.71 0.442582
Target:  5'- aGCGCGUcgGCGGCguccGGUGcGCuGGCCGc -3'
miRNA:   3'- gCGCGCG--CGCCGaa--CUAU-CGuCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 3090 0.66 0.742327
Target:  5'- cCGCgGCG-GCGGCggccgcgGAgcucGGCAGGCgCGg -3'
miRNA:   3'- -GCG-CGCgCGCCGaa-----CUa---UCGUCCG-GC- -5'
5908 3' -60.1 NC_001806.1 + 3301 0.68 0.614329
Target:  5'- gGCGUGCgGCGGCggcggGGaAGCGgGGCCc -3'
miRNA:   3'- gCGCGCG-CGCCGaa---CUaUCGU-CCGGc -5'
5908 3' -60.1 NC_001806.1 + 3344 0.69 0.564745
Target:  5'- gGcCGCGgGgGGCU----GGCGGGCCGg -3'
miRNA:   3'- gC-GCGCgCgCCGAacuaUCGUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 3729 0.68 0.614329
Target:  5'- gCGCGUagGCGCGGC------GCAGGCUGg -3'
miRNA:   3'- -GCGCG--CGCGCCGaacuauCGUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 3770 0.66 0.723181
Target:  5'- uGCGCGCggucguaucgGCGGCUcaUGGccacGGC-GGCCGc -3'
miRNA:   3'- gCGCGCG----------CGCCGA--ACUa---UCGuCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 3908 0.74 0.315117
Target:  5'- -uUGCGCGCGGCgcccgaGAUccggaAGCAGGCCu -3'
miRNA:   3'- gcGCGCGCGCCGaa----CUA-----UCGUCCGGc -5'
5908 3' -60.1 NC_001806.1 + 4672 0.67 0.684061
Target:  5'- gGCGgGCGCGGCgaca-GGCGGuCCGu -3'
miRNA:   3'- gCGCgCGCGCCGaacuaUCGUCcGGC- -5'
5908 3' -60.1 NC_001806.1 + 9872 0.68 0.624312
Target:  5'- uGCGC-CGCGGUgcUGAUGGUAauguGGCCc -3'
miRNA:   3'- gCGCGcGCGCCGa-ACUAUCGU----CCGGc -5'
5908 3' -60.1 NC_001806.1 + 21919 0.73 0.329431
Target:  5'- gGCcCGCGCGGC--GGUGGCcGGCCGc -3'
miRNA:   3'- gCGcGCGCGCCGaaCUAUCGuCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 22546 0.67 0.664223
Target:  5'- gCGCGCGagaaCGCGGCgcUGAcGG-GGGCCGc -3'
miRNA:   3'- -GCGCGC----GCGCCGa-ACUaUCgUCCGGC- -5'
5908 3' -60.1 NC_001806.1 + 22978 0.69 0.574596
Target:  5'- uGCGCGCGUGGCUgcgcGAgcuGCGGuuCGu -3'
miRNA:   3'- gCGCGCGCGCCGAa---CUau-CGUCcgGC- -5'
5908 3' -60.1 NC_001806.1 + 23046 0.66 0.713491
Target:  5'- -cUGCGCGUGGCcggcGGcAGCgAGGCCGc -3'
miRNA:   3'- gcGCGCGCGCCGaa--CUaUCG-UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.